Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00133 ATGCCTTCACTTTCAGAAGCTTACCGAGCCCACCCTGTGCATGTTCAACACAAGCACCCCGACTTAAACTCTCTACAAGAACTTCCCGAGTCCTACGCTTGGACACACACACACATGGAGGATCACACTTCTAATTGTGGTGTGAATAACGAGAGTGTGCCTATTATTGACCTCAATGACCCAAATGCTTCCAAGATGATAGGCCATGCATGCAAGAGTTGGGGAGTGTACCAGGTGGTGAACCATGGCATACCCATGAGGCTCCTCCATGACATTCAGAGGGTTGGTGAGACCCTCTTCTCTCTCCCCTCTCACCAAAAGCACAAAGCAGCTCGTTCCCCTGATGGAATTTCTGGCTATGGCCTCGCTCGCATCTCTTGCTTCTTCCCCAAACTCATGTGGTCTGAGGGCTTCACCATTGTTGGATCCCCTCTTGACCATTTTCGCCAACTTTGGCCTCAAGATTATGACAAATATTGTGATATTGTCATGCAATATGATGAAACCATGAAAAAGTTAGCGGGAAAGTTGATGTGGCTCATGTTGGATTCATTGGGCATTGCAAAGGAAGACCTCAAATGGTTTAGCTCAAAAGGTAAATTCAAAAAGACATGCGCTGCCTTGCAATTGAACTCTTACCCGACTTGTCCGGATCCGGATCGGGCCATGGGTCTGGCTGCCCACACCGACTCCACCCTCCTCACAATCCTCTACCAAAACAACATAAGCGGATTGCAGGTCCACCGGAAGGGCAGCGGGTGGGTGACGGTGCCGCCGCTCTCCGGCGGGCTGGTGGTCAACGTGGGGGACCTCCTCCACATTTTGTCAAACGGGTTGTACCCGAGCGTGCTCCACCGGGTGATGGTGAACCGGGTCCAGCAAAGGCTTTCGGTTGCATATTTATGTGGGCCCCCGCCCGATGTGGAGATCTGTCCACATGCAAAGGTAGTGGGCCCAAGTCAGCCTCCTCTTTATAAGGCAGTGACTTGGCATGAGTACCTTGGCACAAAAGCAAAGCATTTCAACAAGGCACTCTCAACCGTTCGGCTTTGTGCACCTATTAGCGGTTTGTTTGATGTAAATAATAGTGACCAAGTGGGCTAG 1104 0.5072 MPSLSEAYRAHPVHVQHKHPDLNSLQELPESYAWTHTHMEDHTSNCGVNNESVPIIDLNDPNASKMIGHACKSWGVYQVVNHGIPMRLLHDIQRVGETLFSLPSHQKHKAARSPDGISGYGLARISCFFPKLMWSEGFTIVGSPLDHFRQLWPQDYDKYCDIVMQYDETMKKLAGKLMWLMLDSLGIAKEDLKWFSSKGKFKKTCAALQLNSYPTCPDPDRAMGLAAHTDSTLLTILYQNNISGLQVHRKGSGWVTVPPLSGGLVVNVGDLLHILSNGLYPSVLHRVMVNRVQQRLSVAYLCGPPPDVEICPHAKVVGPSQPPLYKAVTWHEYLGTKAKHFNKALSTVRLCAPISGLFDVNNSDQVG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00133 367 Pfam 2OG-Fe(II) oxygenase superfamily 208 304 IPR044861 -
Cca10g00133 367 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 154 IPR026992 -
Cca10g00133 367 SUPERFAMILY Clavaminate synthase-like 16 341 - -
Cca10g00133 367 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 304 IPR005123 -
Cca10g00133 367 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 359 - -
Cca10g00133 367 Gene3D - 15 335 IPR027443 -
Cca10g00133 367 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00133 Cca-Chr10 1455171 1457344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00133 47 345 Glycosyltransferase AT5G59530 30.341 1.09e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00133 K04124 - gmx:100798572 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00133 10 1455171 1457344 Cca10g00133 10 1455171 1457344 ECH
Cca10g00133 10 1455171 1457344 Cca11g00189 11 2310855 2312716 PCT