Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00183 ATGCCCAACACAGTGCCTTCTACACCAACCGATTCCTCCTCTACTAGCTTATTTGAGCTCCTCACTGAAATGAAGAAGCAAACCAATCCAGAATCACTCAACTTCCAAGCAAAATCTCCCTCCCAAATCTCCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTTAAGACCCTTGCTGGCATCAAGGCCAAAGGTGTTCGTGCAGACCTTATTGGCTCCCTCATCACACACTATGCCTCCAAATGGCTCCCTGACCTCTCTGCAGGTGACATGACTGGTAAGAGCCTGGCCCAGTTCGAGGAATCGCCGGAAAGCGTGACGGCGTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTTCCCCCCGAGAAGGATGCCATTCCATGCAACTTCCTGCTAAGGCTTCTGAGAACGGCGAACATGGTTGGGGTTGATGGTTCCTACAGGCAAGAGCTTGAGAAACGTATTTCGTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGGTGATTCCCTCGTTCAGCCACACTTGTGGGACACTCTTGGACGTTGAGCTGGTGATTAGGGTGGTGAAGAGGTTTGTGAGTTTGGACAGCGAGGGAGCTAAGAGCGTTGCTTCTTTGGTTAAGGTGGCCAAGTTGGTCGATTCCTACCTCGCTGAGGCAGCTATGGATGCCAATTTGAGCTTGAACGACTTCGTTACCCTTGCCGCAGCTCTTCCAAGCCATGGAAGAACAACGGATGATGGGTTGTACAGAGCCATTGATACGTATCTAAAAGCACATCCAGGTGTGTCGAAGCAAGAGAGGAAGGGACTGTGCAGGCTAATCGACAGCAGAAAACTAACAGCAGAGGCATCACTCCACGCAGCACAAAACGAACGGTTCCCGGTGAGAGCAGTGATTCAGGTGCTTCTCTCGGAGCACAGCAAACTGAACCGGCACGTGGACTGGAGCGGCTCTTTGGTGAGCGGAGCGAGAAGCCCCGGAGGGTTGGACCTGCCGGCGCGGTGCCTGTCGAAGCGCGAGGTGAGCGCTCAGCAAGTGGAGATAAGGAAGCTGAAGGATGACGTGTACAGGCTTCAGATCCAGTGCAACGCCATGCAGGCGCAGATGGAGAGGATGGTGGTGGAGAAGAAGAAGGGCTTCTTCAAGTGGAAGAAGTTCGCCTTTCCCATCAAAGCCGCCGACAGAATGGACCTCGAACTCGAGGGGAACGTCAGGTGCACGCCTGTGGACATGAAGACAAGGTTGGTTAATGTCAAAGGTGGTGGCAGAACTGctcactctcacactcacactcacactcacaAGTGGAGGAAGTCCATGTCTTGA 1362 0.5176 MPNTVPSTPTDSSSTSLFELLTEMKKQTNPESLNFQAKSPSQISSECWFDDACILDMDYFVKTLAGIKAKGVRADLIGSLITHYASKWLPDLSAGDMTGKSLAQFEESPESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRVVKRFVSLDSEGAKSVASLVKVAKLVDSYLAEAAMDANLSLNDFVTLAAALPSHGRTTDDGLYRAIDTYLKAHPGVSKQERKGLCRLIDSRKLTAEASLHAAQNERFPVRAVIQVLLSEHSKLNRHVDWSGSLVSGARSPGGLDLPARCLSKREVSAQQVEIRKLKDDVYRLQIQCNAMQAQMERMVVEKKKGFFKWKKFAFPIKAADRMDLELEGNVRCTPVDMKTRLVNVKGGGRTAHSHTHTHTHKWRKSMS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00183 453 MobiDBLite consensus disorder prediction 432 453 - -
Cca11g00183 453 ProSiteProfiles NPH3 domain profile. 46 320 IPR027356 -
Cca11g00183 453 PANTHER OS12G0117600 PROTEIN 2 453 IPR043454 -
Cca11g00183 453 MobiDBLite consensus disorder prediction 437 453 - -
Cca11g00183 453 Pfam NPH3 family 47 296 IPR027356 -
Cca11g00183 453 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 453 - -
Cca11g00183 453 Coils Coil 360 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00183 Cca-Chr11 2245577 2247271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00183 45 420 EF-hand Containing Proteins AT3G44820 31.265 1.96e-54 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00183 - - gmx:100793820 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00183 11 2245577 2247271 Cca11g00183 11 2245577 2247271 ECH
Cca10g00131 10 1316734 1319227 Cca11g00183 11 2245577 2247271 PCT