Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00131 ATGAAGAAGCAGTGTTGTGAAGATTCAGAGGCAAATGTTGGATCATGGCAATGCTGGTTCGACGATGCATGCATCCTTGACATGGATTACTTTGTGAAGACCCTTTCAAGCATCAAACAGAAAGGCGTTCGTGCAGACTTGATTGGTTCCATCATCACTCATTACGCCTCCATATGGCTCCCTGACCTCTCTGCCTCTGCTGAAAATGGTGTCACCACTCACTTCCACTCCCCGGAAAGCGTCACGACATCATGGATGAAGAAGAGGTTCTTTGTGGAAACCTTGGTGAGTGTTCTGCCTCCTGAGAAGGATTCTGTCCCATGCAACTTCCTCCTTCGCCTTCTGAGAACCGCCAACATGGTTCGGGTTGATGCCACTTATAAAGCTGAGCTTGAGAATCGCATTTCGTGGCAGCTTGACCAAGCTTCTCTCAAAGAGCTCATGATACCCTCCTTCAGCCACACGTGTGGGACTCTCTTGGATGATGAGCTTGTCTTGAGGTTGGTTAAGAGGTTTGTGAGTTTAGACCGTGATGGTGCTGCTTTGGTTAAGGTGGCCAAGTTGGTTGATTGCTACCTAGCTGAGGCTGCTGTGGATGCCAATTTGACCCTGTCTGAGTTCCTTGCACTTGCTAGAGCTCTTCCAAGCCATGCAAGAGCCACGGATGATGGCTTGTACCGAGCCATTGACACTTATCTAAAAGCACATCCAGGTGTGTCAAAGCAAGAAAGAAAGGGCCTGTGTAGGCTGCTTGATTGCCGGAAACTCACACCAGAGGCCTCACTTCATGCAGCTCAAAACGAGCGGTTGCCTGTCAGAGCTGTGATTCAGGTGCTCTTCTCTGAACAAACCAAACTCAACCAGCATATAGATTGGAGTAGCTCCTTCAGTGGCTTGAGGAGTCCGAATGGGGGCCTCGACCCACCGGCACGATGCCTTTCAAAGCGTGAAATGAGTGCTCAGCAAATGGAGATAAGGAAGCTGAAGGAAGATGTTTACAGGCTGCAAAGACAGGTCAATGCCATGCAAGTGCAGATGGAGAGGTTGGCGGCAAAGAAGAAGGGCTTATTCAAATGGAAGAAGTTTGGAATGCCTATGTTTAGTAGAAGTGTGGCAGTGGGAGAGGTGGAGAACATTGATGAGGAAGAAGAAGAGGAGACTGAAAGGGAAGTCAGATTTGGAGGGCAAACGCCTATGGACATGAAAGCCAGTCTGGTCAAAAGTAGGACTCCCCACAAGTGGAGGAAATCTATGTCCTGA 1260 0.4897 MKKQCCEDSEANVGSWQCWFDDACILDMDYFVKTLSSIKQKGVRADLIGSIITHYASIWLPDLSASAENGVTTHFHSPESVTTSWMKKRFFVETLVSVLPPEKDSVPCNFLLRLLRTANMVRVDATYKAELENRISWQLDQASLKELMIPSFSHTCGTLLDDELVLRLVKRFVSLDRDGAALVKVAKLVDCYLAEAAVDANLTLSEFLALARALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLLDCRKLTPEASLHAAQNERLPVRAVIQVLFSEQTKLNQHIDWSSSFSGLRSPNGGLDPPARCLSKREMSAQQMEIRKLKEDVYRLQRQVNAMQVQMERLAAKKKGLFKWKKFGMPMFSRSVAVGEVENIDEEEEEETEREVRFGGQTPMDMKASLVKSRTPHKWRKSMS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00131 419 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 15 419 - -
Cca10g00131 419 Coils Coil 318 352 - -
Cca10g00131 419 PANTHER OS12G0117600 PROTEIN 15 419 IPR043454 -
Cca10g00131 419 Pfam NPH3 family 18 261 IPR027356 -
Cca10g00131 419 ProSiteProfiles NPH3 domain profile. 17 285 IPR027356 -
Cca10g00131 419 MobiDBLite consensus disorder prediction 378 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00131 Cca-Chr10 1316734 1319227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00131 19 348 EF-hand Containing Proteins AT3G44820 30.645 2.07e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00131 - - gmx:100777820 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00131 10 1316734 1319227 Cca10g00131 10 1316734 1319227 ECH
Cca10g00131 10 1316734 1319227 Cca11g00183 11 2245577 2247271 PCT