Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00169 ATGCAAACTCATGTAAAAGTTCGTAACCCTCTTGGAGGAAAAAATCCACGAAATCCAAGCCCAAAAATTAACTTTGTGGGCCCTGCAGCAACTCGTAAGAAAGGTGGGGAACAAAAGACAGAAACTCAAGACTTTCAAGATCCGAAGAAAGGCAATAACCATGAGAATCATATCACGCCAGATTATAGGTCTACACAAGCGATGAACACCCAACGTGTAATGGTTGGACTTCGATCACTAAACCACCAATCAAGTGAAGACCCTTTTCTTCGTAACCTAGTGACGCATGTTATTAAACCTGATGAAGAAACTGCGGCGTTCGCTGCAGCCCTACGACGCCATTTTGAGCCTGATGGAGAATATTTACCAGCAGAAGAGAGACATTTGATACCTCAAGTAGAAAACccagggGTCATCCAAATCCAATGGCAATGGTGGTGGGTTGAATTCAACTTTCGGTTGGGTCTGTTTGATTGGGAAGCTAGAGAAAGGGCCATGGAGGCCCTGCACTTCCTCCGCCTGGTTGCCATGTCCGTTGCCCAAAAACCTCTCTTTTTGCGCTCTGCTGTAACCCCATTATCCACAATTGGCATTGCAAGGCCACCACTGTGTTGGCGCTCTGTATCTTCTTCTCAAACTTTCGCTGCCAGAGCAGGGTGGTTTTTGGGTCTGGGAGCAGACAGCAAGAAGACCAATTTACCTGACATCGTCAAAGCCGGTGACCCTGTTCTGCACGAGCCTGCACAGGAAGTTGATGCTAACGAGATAGGGTCTGAGAGAGTGCAGAAGGTCATTGATGACATGATCCGGGTCATGAGGAAGGCTCCTGGAGTTGGCTTAGCTGCTCCTCAAATTGGAGTTCCTTTGAGGATAATTGTTTTGGAAGATACCAAAGAGTATGTTAGTTATGTCCCAAAGGAAGAGGCTAAAGTTCAAGATAGAAGAGCTTTTGATCTTTTGGTGATCCTAAATCCCAAGCTAGAGAAGAAGGGCAAGAGGACTGCTCTATTTTTTGAAGGGTGCTTGAGTGTTGATGGATTTAGAGCAGTGGTAGAACGACACCTTGATGTTGAGGTTACAGGTTTGGATCGTTATGGTGCACCAATCAAAATAAATGCTTACGGTTGGCAGGCTCGAATTTTACAGCATGAGTGTGATCACTTGGATGGAACTATATATGTGGATAAGATGGTACCTAGAACTTTCAGAACTGTGGACAACCTGGACCTGCCTCTTGCCCAGGGATCCTAA 1251 0.4548 MQTHVKVRNPLGGKNPRNPSPKINFVGPAATRKKGGEQKTETQDFQDPKKGNNHENHITPDYRSTQAMNTQRVMVGLRSLNHQSSEDPFLRNLVTHVIKPDEETAAFAAALRRHFEPDGEYLPAEERHLIPQVENPGVIQIQWQWWWVEFNFRLGLFDWEARERAMEALHFLRLVAMSVAQKPLFLRSAVTPLSTIGIARPPLCWRSVSSSQTFAARAGWFLGLGADSKKTNLPDIVKAGDPVLHEPAQEVDANEIGSERVQKVIDDMIRVMRKAPGVGLAAPQIGVPLRIIVLEDTKEYVSYVPKEEAKVQDRRAFDLLVILNPKLEKKGKRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKINAYGWQARILQHECDHLDGTIYVDKMVPRTFRTVDNLDLPLAQGS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00169 416 PRINTS Peptide deformylase signature 370 399 IPR023635 GO:0042586
Cca11g00169 416 PRINTS Peptide deformylase signature 339 350 IPR023635 GO:0042586
Cca11g00169 416 PRINTS Peptide deformylase signature 351 369 IPR023635 GO:0042586
Cca11g00169 416 PRINTS Peptide deformylase signature 266 295 IPR023635 GO:0042586
Cca11g00169 416 PANTHER PEPTIDE DEFORMYLASE 172 415 - -
Cca11g00169 416 SUPERFAMILY Peptide deformylase 232 404 IPR036821 -
Cca11g00169 416 MobiDBLite consensus disorder prediction 34 57 - -
Cca11g00169 416 Pfam Polypeptide deformylase 235 400 IPR023635 GO:0042586
Cca11g00169 416 PANTHER PEPTIDE DEFORMYLASE 172 415 IPR023635 GO:0042586
Cca11g00169 416 Gene3D Peptide deformylase 231 415 IPR036821 -
Cca11g00169 416 TIGRFAM pept_deformyl: peptide deformylase 235 399 IPR023635 GO:0042586
Cca11g00169 416 CDD Pep_deformylase 236 393 IPR023635 GO:0042586
Cca11g00169 416 Hamap Peptide deformylase [def]. 232 408 IPR023635 GO:0042586
Cca11g00169 416 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00169 Cca-Chr11 2046038 2055452 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00169 K01462 - gmx:100784292 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00169 11 2046038 2055452 Cca11g00169 11 2046038 2055452 ECH
Cca10g00114 10 1130353 1131551 Cca11g00169 11 2046038 2055452 PCT