Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00114 ATGCCGGAGAGGCAGATTGGAATCCCATTAAGGATTATTGTTTTGGAAGATAAAAAACAATACATGACTTACAAGCAAGAGGAAGAGTTAAAAGCACAAGATAGAAGACCTTTTGATCTTTTGGTCATCCTCAACCCCAAGCTCAAGTACAACACCAATAGAACTGCACTCTTTTTTGAAGGCTGCTTGAGTGTGGCTGGATACTGTGTTGTGGTAGAGCGGTACCTTGATGTTGAAGTTGCAAGTTTTGATCGTTACGGTGAACCCCTCAAAATAAATGCTACTGGTTGTCAGGCCCGGATCTTACAACATGAGTGTGATCACCTGGATGGAACACTGTATGTTGATAAGATGGTACCTAGAACTTTCAGAGTTCTAGAGAACATGTATAAGCCTCTCGCCCATGGGTGCCCCAAACTTGGCCCCCGCTAA 432 0.4352 MPERQIGIPLRIIVLEDKKQYMTYKQEEELKAQDRRPFDLLVILNPKLKYNTNRTALFFEGCLSVAGYCVVVERYLDVEVASFDRYGEPLKINATGCQARILQHECDHLDGTLYVDKMVPRTFRVLENMYKPLAHGCPKLGPR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00114 143 PRINTS Peptide deformylase signature 60 71 IPR023635 GO:0042586
Cca10g00114 143 PRINTS Peptide deformylase signature 72 90 IPR023635 GO:0042586
Cca10g00114 143 PRINTS Peptide deformylase signature 91 120 IPR023635 GO:0042586
Cca10g00114 143 SUPERFAMILY Peptide deformylase 5 128 IPR036821 -
Cca10g00114 143 Gene3D Peptide deformylase 3 142 IPR036821 -
Cca10g00114 143 PANTHER PEPTIDE DEFORMYLASE 4 143 IPR023635 GO:0042586
Cca10g00114 143 Pfam Polypeptide deformylase 5 121 IPR023635 GO:0042586
Cca10g00114 143 PIRSF Pep_def 4 140 IPR023635 GO:0042586
Cca10g00114 143 PANTHER PEPTIDE DEFORMYLASE 4 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00114 Cca-Chr10 1130353 1131551 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00114 K01462 - gmx:100306710 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00114 10 1130353 1131551 Cca11g00169 11 2046038 2055452 PCT