Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00166 ATGGAAGCAATCACCGAGGGAGTGAATAACATCAACGTCTCCGATTCTTATAAGAAAAACCGCATTCAGGTTTCCAACACCAAAAAGCCCCTTTTTTTCTACGTTAATCTCGCCAAGAGGTATATGCAACAGCATAATGAGGTTGAGCTCTCAGCACTAGGAATGGCTATTGCTACAGTTGTTACTGTAGCTGAAATCTTGAAAAACAATGGGCTTGCTGTTGAAAAGAAAATCATGACATCAACAGTTGACATCAAAGATGATTCTAGAGGAAGACCTGTCCAAAAGGCTAAGATTGAAATATTACTGGGGAAGACTGCAAACTTTGATGAGTTGATGGCTGCCGCCGCTGCGGAAGATGGTGAAAATGGAGATGTTGAAGAGCATGCCGCATAA 396 0.4192 MEAITEGVNNINVSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLGKTANFDELMAAAAAEDGENGDVEEHAA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00166 131 Gene3D - 18 129 IPR036882 GO:0003676
Cca11g00166 131 PIRSF UCP030333_Alba 1 131 IPR014560 -
Cca11g00166 131 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 125 IPR014560 -
Cca11g00166 131 SUPERFAMILY AlbA-like 19 114 IPR036882 GO:0003676
Cca11g00166 131 PANTHER - 1 125 - -
Cca11g00166 131 Pfam Alba 20 75 IPR002775 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00166 Cca-Chr11 2011986 2014947 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00166 - - gmx:100790121 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00166 11 2011986 2014947 Cca11g00166 11 2011986 2014947 ECH
Cca10g00109 10 1104659 1107515 Cca11g00166 11 2011986 2014947 PCT