Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00109 ATGGAAGGCGTAACAGAGGGAGTGAACAACATCAGCATCAACATGAACGATTCGTATAAGAAGAATCGCATTCAGGTCTCTAACACCAAGAAGCCCCTCTTTTTCTACGTCAATCTCGCCAAGAGATATATGCAACAGCATAATGAGGTCGAGCTCTCAGCACTAGGAATGGCAATTGCCACAGTGGTAACTGTTGCTGAAATTTTGAAAAACAATGGGCTTGCTGTTGAAAAGAAAATCATGACATCAACTGTTGACATAAAGGATGATTCTAGAGGTAGACCTGTCCAAAAGGCAAAGATTGAAATTGTACTTGGGAAGACAGCCAATTTCGATGAGTTGATGGCTGCTGCAGCAGCTGAAGATGGTGAAAATGGAGATATCGAAGAGAGCGCATGA 399 0.4261 MEGVTEGVNNISINMNDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAAEDGENGDIEESA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00109 132 Pfam Alba 22 77 IPR002775 GO:0003676
Cca10g00109 132 Gene3D - 20 130 IPR036882 GO:0003676
Cca10g00109 132 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 127 IPR014560 -
Cca10g00109 132 PIRSF UCP030333_Alba 1 132 IPR014560 -
Cca10g00109 132 SUPERFAMILY AlbA-like 21 116 IPR036882 GO:0003676
Cca10g00109 132 PANTHER - 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00109 Cca-Chr10 1104659 1107515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00109 - - gmx:100527358 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00109 10 1104659 1107515 Cca10g00109 10 1104659 1107515 ECH
Cca10g00109 10 1104659 1107515 Cca11g00166 11 2011986 2014947 PCT