Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00152 ATGTTCTCTTCCTCAAGCTCCTTCTTTCTCTGCCTTCTCATCTTCTCTGTAACCTTTTCTCACGTTTTGGGGGATAAAATATTTACAGGAACATATGGAGTAAACTATGGTAGGATAGCAGACAATCTACCTTCTCCTCAGAGTGTAGTTACCCTTTTGAAAGCTGCGAAGATTAGGAACATAAGAATATATGATGCTGATCACCAAGTCCTGAGTGCCTTCAAAGGTTCAGGAATTGCAATCATTATTGGGCTACCAAATGAGTTTCTGAAAGACATAAGTGTAGGGGAAGATCGTGCCATGAATTGGATCAAAGAAAATGTTCAGCCATTTCTTCCAGGAACCAAAATCCGTGGCATTGCTGTGGGGAATGAAATATTGGGAGGCACAGATATGGAGCTTTGGGAAGCTTTGGTTCCTGCTGCTAAAAACGTGTACACAGCCCTTGAAAGGCTTGGTTTGGCACACACCATTCAAGTCTCAAGTCCACATTCTGAAGCCGTGTTTGCAAATTCATACCCTCCATCTGCATGCACTTTTAGGGAAGATGTGTTACCTTTCATGAAGCCTCTCTTGCAATTCTTCTCACAAATTGGCACTCCTTTCTACATAAATGCATACCCCTTTTTGGCCTATAAAAATGACCCTCAACACATTGACATCAACTATGCCCTCTTTAAGAAAAATCCTGGGATCTATGATGCCAAGACTAAGCTACACTATGACAATATGTTTATGGCCCAAATTGATGCTGCTTATGCAGCCTTGGAGAAGGTTGGATTTGACAAGATGGAAGTCATTGTTTCTGAGACAGGTTGGGCCTCTCATGGAGATGAAAATGAAGCTGGTGCAACAGTGAAAAATGCAAAGACTTATAATAAAAACCTGCGGAAGCTACTACTGAAGAAAAAGGGTACCCCTTATAGGCCTAAGATGGTTGTGAGGGCTTACATCTTTGCTTTGTTCAATGAGAATTTGAAGCCTGGCCCTACTTCTGAGAGAAACTTTGGATTGTTCAAACCAGATGGTAGCATTGCATATGATATAGGCTTTACTGGGCTTGTATCTTCCGCACCAACCTCTTCTTTTCTTTCATTCAAGGGTATTGGATCTTTATATGTGATGGTTTCTACAAGTTGTGCGGCTTTTCTTCTTCTTGTAGCATTATAA 1170 0.412 MFSSSSSFFLCLLIFSVTFSHVLGDKIFTGTYGVNYGRIADNLPSPQSVVTLLKAAKIRNIRIYDADHQVLSAFKGSGIAIIIGLPNEFLKDISVGEDRAMNWIKENVQPFLPGTKIRGIAVGNEILGGTDMELWEALVPAAKNVYTALERLGLAHTIQVSSPHSEAVFANSYPPSACTFREDVLPFMKPLLQFFSQIGTPFYINAYPFLAYKNDPQHIDINYALFKKNPGIYDAKTKLHYDNMFMAQIDAAYAALEKVGFDKMEVIVSETGWASHGDENEAGATVKNAKTYNKNLRKLLLKKKGTPYRPKMVVRAYIFALFNENLKPGPTSERNFGLFKPDGSIAYDIGFTGLVSSAPTSSFLSFKGIGSLYVMVSTSCAAFLLLVAL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00152 389 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 374 IPR044965 GO:0004553|GO:0005975
Cca11g00152 389 Pfam Glycosyl hydrolases family 17 33 351 IPR000490 GO:0004553|GO:0005975
Cca11g00152 389 SUPERFAMILY (Trans)glycosidases 32 350 IPR017853 -
Cca11g00152 389 Gene3D Glycosidases 31 355 - -
Cca11g00152 389 PANTHER GLYCOSYL HYDROLASE SUPERFAMILY PROTEIN 7 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00152 Cca-Chr11 1888350 1890300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00152 28 360 Glycoside Hydrolase AT3G15800 79.042 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00152 - - gmx:100789056 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00152 11 1888350 1890300 Cca11g00152 11 1888350 1890300 ECH
Cca10g00094 10 996308 998644 Cca11g00152 11 1888350 1890300 PCT