Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00150 atgtatatatatatCTCCCTCTCAACGCTGCATTTGTTGAAGCATTCACACAGAAGAAGAAGAATGAAGGAGGAGTTGGTGGTGCAAGAAGGGTACGTTTTGAAGGAAGAAACCCAGCTGACAGTGCTGAAAACCTCTCTCTTCTTCAACGGTGACGGCTTCACAGTGTACGATTGCAAGGGCAACCTCGTCTTTCGGTTCGACACCTATGGTCCCCGCTCTCGCGACAAGGACGAACTTGTCCTCATGGATCCACATGGCCGTTCTCTTCTAACCCTTCGTCGAAAGAAACCGAGTCTTCATCAACGGTGGGAAGGGTTCAAAGGGGAGAAAACGGAGGGTGCTAAAGCGGTCTTCAGCGTGAAGAGATCCTCGATCATCGGACGGTCCAGGAGCAGCGTGGCGGTGGAGGTCTACGATAGCCCCGGTGTGGAGTACCTCATCGAAGGGTGTTTCCCGCAGCGGTGCTGCAAGGTTTTGAATGCGGCCAGGGAATTAGTGGCTGAGATTCGTCGCAAGGTGGACCCCACCACCAGCGTTATGCTCGGCAAGGAAGTCTTTTGCCTTTGCGTTAAGCCCGGTTTTGATGCCGCCTTCGCCATGGCCTTGGTCTTGGTACTTGATCAGATCAACGGTGAGAATTACTTTGATGATAGAATCGTCGACCCCGCGGTGCATCCTGCCGCACCAGATCCGGGACTCGTTTCGCCTGTTCCCTAA 720 0.5278 MYIYISLSTLHLLKHSHRRRRMKEELVVQEGYVLKEETQLTVLKTSLFFNGDGFTVYDCKGNLVFRFDTYGPRSRDKDELVLMDPHGRSLLTLRRKKPSLHQRWEGFKGEKTEGAKAVFSVKRSSIIGRSRSSVAVEVYDSPGVEYLIEGCFPQRCCKVLNAARELVAEIRRKVDPTTSVMLGKEVFCLCVKPGFDAAFAMALVLVLDQINGENYFDDRIVDPAVHPAAPDPGLVSPVP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00150 239 Pfam LURP-one-related 27 206 IPR007612 -
Cca11g00150 239 SUPERFAMILY Tubby C-terminal domain-like 26 211 IPR025659 -
Cca11g00150 239 PANTHER LURP-ONE-LIKE PROTEIN 27 223 - -
Cca11g00150 239 PANTHER - 27 223 IPR007612 -
Cca11g00150 239 Gene3D - 25 215 IPR038595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00150 Cca-Chr11 1871131 1872391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00150 - - gmx:100783735 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00150 11 1871131 1872391 Cca11g00150 11 1871131 1872391 ECH
Cca10g00093 10 993044 994191 Cca11g00150 11 1871131 1872391 PCT