Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00093 ATGGACCTTTGTGTGGCTTCTGGCGCAGGTGAGGTTGAAGATGCATCGTGCGTGTTCAAACAAGAGATGAATCTAACGGTGCTTAAAACCTCTCTGTTCTTCGCGGGCGATGGTTTCACCGTATACGATTGCAAGGGTCAACTCGTCTTCAGAGTTGACTCTTACGGACCCGACACTCGCGACAGAGATGAACTCGTTCTCATGGACCCTAACGGACGTTGTCTCCTCACCGTTCGTCGAAAGAGGCCGAGTTTGCATCAACGGTGGGAGGGGTTCAAGGGGGAGAGAATGGACGGTGATAAGCCCATCTTCAGCGTGAAAAGAGCGTCGATCATAGGACGTTCGCGTGGGAGTTTGACGGTGGAGATGTACGAGAACCCGGGTGAGGAGTACCAGATCGAAGGGTGCTTCTCGCAGCGATGCTGCACGGTTTTCAATGCGATGAAGGAGTCGGTGGCTGAGATTCGTCGAAAAGTGGACCCCACCACCAGCGTTGTGCTTGGTAGGGAAGTGTTCTCGCTTTCTGTTAAGCCTGGTCTTGATGCTGCCTTTGCCATGGGGTTTGTGCTCGTGCTTGATCAGATCAACGGTGAGGATTACGTTGATAGTAATGCCACCACGGAACCTGCCGTGCACCCTAGCACAGAAGATTAA 654 0.5275 MDLCVASGAGEVEDASCVFKQEMNLTVLKTSLFFAGDGFTVYDCKGQLVFRVDSYGPDTRDRDELVLMDPNGRCLLTVRRKRPSLHQRWEGFKGERMDGDKPIFSVKRASIIGRSRGSLTVEMYENPGEEYQIEGCFSQRCCTVFNAMKESVAEIRRKVDPTTSVVLGREVFSLSVKPGLDAAFAMGFVLVLDQINGEDYVDSNATTEPAVHPSTED 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00093 217 PANTHER LURP-ONE-LIKE PROTEIN 14 206 - -
Cca10g00093 217 PANTHER - 14 206 IPR007612 -
Cca10g00093 217 Pfam LURP-one-related 12 191 IPR007612 -
Cca10g00093 217 Gene3D - 12 201 IPR038595 -
Cca10g00093 217 SUPERFAMILY Tubby C-terminal domain-like 17 196 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00093 Cca-Chr10 993044 994191 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00093 - - gmx:100527456 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00093 10 993044 994191 Cca10g00093 10 993044 994191 ECH
Cca10g00093 10 993044 994191 Cca11g00150 11 1871131 1872391 PCT