Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00148 ATGCTTGGTTTAGGTGCGGACCTCTTGTGGGCCGACATGAACCGTCTCCTTGCCTTTCTCTTCCACCAGGGAGTGTTGGATGAACAATTCTTGCAGCTTCAGCAGCTGCAAGATGAGACATCCCCTAACTTCGTCTCCGAGGTTGTCAACATTTATTTCCACGAATCCGAAAAGCTTCTCACCAATCTCAGAGCTTTGCTGATGGAGAGAGAGTTCTCGGACTATAAGAAAATGGGGATCCATTTGAATCAGTTCATGGGTAGCAGCTCAAGTATTGGAGCCAAGAGAGTCAGAAACGTTTGCGTTGCCTTTCGTGCTGCTACTCAACAGAATAACCGTGCTGGATGCTTGCGCGCCTTGGAGATGTTGGAGCATGAATATTGCTATCTCAAGAACAAGTTGCATGAATTATTCCAAATTGAGCAGCAACGGGCTTTGGCAGCAGGAGTTAGGTACCCGGCGCAGAATTAA 471 0.4756 MLGLGADLLWADMNRLLAFLFHQGVLDEQFLQLQQLQDETSPNFVSEVVNIYFHESEKLLTNLRALLMEREFSDYKKMGIHLNQFMGSSSSIGAKRVRNVCVAFRAATQQNNRAGCLRALEMLEHEYCYLKNKLHELFQIEQQRALAAGVRYPAQN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00148 156 Pfam Hpt domain 47 121 IPR008207 GO:0000160
Cca11g00148 156 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 41 137 IPR008207 GO:0000160
Cca11g00148 156 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 6 1 152 - -
Cca11g00148 156 Gene3D HPT domain 4 156 IPR036641 GO:0000160
Cca11g00148 156 PANTHER - 1 152 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cca11g00148 156 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 9 143 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00148 Cca-Chr11 1838228 1839685 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00148 K14490 - gmx:100789608 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00148 11 1838228 1839685 Cca11g00148 11 1838228 1839685 ECH
Cca10g00092 10 987961 988782 Cca11g00148 11 1838228 1839685 PCT