Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00092 ATGCTTGGTTTCGGTGCCGACCTCTTGTGGGCCGACATGAACCGACTCCTCGCTTTTCTTTTCCACCAGGGTGTGTTGGATGAGCAGTTTCTGCAGCTTCAACAGCTCCAAGATGAGGCCTCCCCTAACTTCGTCTCAGAGGTCCTCAACATCTACTTCCACGAGTCCGAGAAGCTACTCACCAATCTCAGAGGATTGCTCATGGAAAGGGACTACAAGAAAATGGGGGTCCATTTGAACCAGTTCATGGGTAGCAGCTCAAGCATTGGTGCCAAGAGAGTCACTAACGTTTGCGTTGCCTTTCGTGCTGCTACTCTCCAGACCAACCGTGCTGGATGCTTGCGTGCGTTGGAGATGCTCGAGCATGAATATTGCTATCTCAAGAACAAATTGCATCAACTTTTCCAAATAGAGCAGCAACGTGCATTGGTAGCAGGAGTCAGATACCCCGTGCAGAATCAAAATCAATAA 471 0.4926 MLGFGADLLWADMNRLLAFLFHQGVLDEQFLQLQQLQDEASPNFVSEVLNIYFHESEKLLTNLRGLLMERDYKKMGVHLNQFMGSSSSIGAKRVTNVCVAFRAATLQTNRAGCLRALEMLEHEYCYLKNKLHQLFQIEQQRALVAGVRYPVQNQNQ 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00092 156 PANTHER - 1 149 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cca10g00092 156 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 9 140 IPR036641 GO:0000160
Cca10g00092 156 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 41 134 IPR008207 GO:0000160
Cca10g00092 156 Gene3D HPT domain 5 153 IPR036641 GO:0000160
Cca10g00092 156 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 6 1 149 - -
Cca10g00092 156 Pfam Hpt domain 47 117 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00092 Cca-Chr10 987961 988782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00092 K14490 - gmx:100814937 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00092 10 987961 988782 Cca10g00092 10 987961 988782 ECH
Cca10g00092 10 987961 988782 Cca11g00148 11 1838228 1839685 PCT