Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00143 ATGTCTGCTGCTGTGTGCGGAACCAAGAGATCTTTCTTCGAAGAACTTCCACCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGCTCCTCTTCTCCGATTCGCTTCCCTCCTCCCTCTCTCATCGATCATCTTCGCCCTCTCTTTCCCCACATGGACGACCTCGTCCTTGAGAGAGCTCTCCAGGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGCTGAATGAGCTTTGCTTGGGAACTGCAGATGGAAATGGAACTGTCGAAGAATCGGAGGTTGTCGATGCGGGTAAATTGGAAGATGATGGAAATGCTTCTGTTTCTCAGAGCCAGCCTGCTATGAACAATCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTTAGGGAGATGATGGTTGCTACTAGTGTTGATGATGCTAGAGCCCGTGCTGCCAGAATGCTGGAGGTTCTTGAGAAATCAATCAGTGAAAGAGCAAGGGCCGAGGCAACTGATGCGCTTCAGAAGGAAAATTTGATGCTGAAAGAGCAAATTGAAGCCTTGATTAAGGAGAAAAATTCTTTTAAAAATGCTTTTAAAATCCAGCATGAACGTTATGCTGATTATGATGTTAAGAACCAAGAGTTGCAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTGGGAATGCATTTGAAGCAGGCTCAACAGAGCAACCCCTTTCCTGGGCGCTTCCCTGATGTCTTCTAA 768 0.4622 MSAAVCGTKRSFFEELPPSPPLSKRLRCSSSPIRFPPPSLIDHLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGTADGNGTVEESEVVDAGKLEDDGNASVSQSQPAMNNLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERARAEATDALQKENLMLKEQIEALIKEKNSFKNAFKIQHERYADYDVKNQELQHLKQLVSQYQEQIRTLEVNNYALGMHLKQAQQSNPFPGRFPDVF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00143 255 Coils Coil 165 192 - -
Cca11g00143 255 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 252 - -
Cca11g00143 255 SUPERFAMILY UBA-like 39 81 IPR009060 GO:0005515
Cca11g00143 255 ProSiteProfiles CUE domain profile. 36 81 IPR003892 GO:0043130
Cca11g00143 255 Coils Coil 203 230 - -
Cca11g00143 255 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 252 - -
Cca11g00143 255 CDD CUE 39 74 - -
Cca11g00143 255 Pfam CUE domain 39 76 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00143 Cca-Chr11 1766491 1771632 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00143 - - gmx:100813137 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00143 11 1766491 1771632 Cca11g00143 11 1766491 1771632 ECH
Cca10g00086 10 943517 944095 Cca11g00143 11 1766491 1771632 PCT