Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00086 ATGTCTGCTGCGGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCCCCTTCTCCGCCAGTGTCCAAGAGGCTCCGCTGTTCCTCTTCCCCAATTCGCCTCTCTCTTCCCTCTCTCATCGACCACCTTCGCTCCCTCTTCCCTCATATGGATGACCAGGTCCTCGAGAGAGCGCTCCAACAATGCGGCAATGACCTAGACGCCGCCATCAAGAGCCTCCACGGCCTCTGCTTGGGATCTGCCGATGATACTTCTCAATCCGCTCCTCCGCAGCCTGACCCTAACGTCGTCCAAGCAGGTGCGTTGGGAGAGAATGAGGATGCTTCTGCTTGCTCGTGA 342 0.5731 MSAAVCGSKRSFFEELPPSPPVSKRLRCSSSPIRLSLPSLIDHLRSLFPHMDDQVLERALQQCGNDLDAAIKSLHGLCLGSADDTSQSAPPQPDPNVVQAGALGENEDASACS 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00086 113 ProSiteProfiles CUE domain profile. 36 82 IPR003892 GO:0043130
Cca10g00086 113 MobiDBLite consensus disorder prediction 82 113 - -
Cca10g00086 113 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 112 - -
Cca10g00086 113 Pfam CUE domain 38 74 IPR003892 GO:0043130
Cca10g00086 113 Gene3D - 38 80 - -
Cca10g00086 113 CDD CUE 39 74 - -
Cca10g00086 113 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 112 - -
Cca10g00086 113 SUPERFAMILY UBA-like 37 81 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00086 Cca-Chr10 943517 944095 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00086 - - gmx:100815998 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00086 10 943517 944095 Cca11g00143 11 1766491 1771632 PCT