Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00140 ATGGAGTTTGATGCTCGTGTTACTCCTGTTAATAATGATGAGATACCTGATCCAGGAGTGCTACTCAACAAGCAGAGGAGAAAGAAGTCTATTGTGTGGGAATACTTCACAGTGGAAGCTGTTGGATTTGGATGTAGCAGGGCTTTCTGTAAACAGTGCAGGAAATCATTTTCTTATATATCTAATTCAAAACTAGCTGGCACGAGCCATTTGAAAAGACACATTTCTTTGGGTATCTGTCAAGTTCTTCGGGAGAAAAACCTACAAAGCCCATATCCTAAAACTGGTGGTTCTCAAGATACTGCCAATCCACCCAAGAAAAGGCCAAGAGCAACACCTCGATTTGCTGGTAATAGTATCTCATTTGATCAGCAGCGTTGCAACCTTGATATTGCCAAAATGATAATTTTACATGATTATCCTCTTCATATTGTGGAACAACCGGGTTTCATCAATTTTGTACGGATTCTTCAACCCCAGTTCAATCCGTTATGTTTAAAATCTGTTGAAGGGGATTGTGTTGCTATGTACCTCAGGAAAAAGCAAAATTTGTTAAATATTATTAATGGGATTCCTGGACAAGTCAACCTGACATTGGACTTTTGGACTTCAAACCAGACAATGGGTTATTTTTTTGTTCGAGGACACTTCATTGATAATGATTGGAACTTACATCGTCCTATTCTCAATGTTGTTTCAGTACCATTTCCTGATTCTGCTGACTCTTTAAATCAAACGTTAGTGATCTGCCTATCTGATTGGCATTTGGAGGGGCGGCTGTTTACCCTTGCGCTTGATAAATCCTTTTCCAGTGAGATTGTGATAGAAAATTTGAGAGGCCTTCTCTCTGTGAAGAACCCTGCCATCCTCAATGGTCAGCTGTTAAACTGGAATTGTTATGCTCGTGTTCTTAGTCGCCTTGCAGCACATGCACTATGGATCATGAGAGAAACTGTTAGCAATGTCCGCGATAGTGTAAAGTATGTGAAATCTTCCGAATCCCAAGAAGAGAAGTTTATTAAACTGAAGCAACAACTACAAGTACCTAGTATGATGGACCTTTCAATTGATGACCCGTGTAAGTGGGACACAACTTATCATATGCTTGTAGCTGCCTGTGAAATAAAAGAAGTCTTCGCTTGCCTTGATACCACCGATCCTGGTTATAGAATGAATCTAACAATGGGTGACTGGAAGCGGGTTGAAACTCTCTGCACATATTTGAAGTATTTGTATGATGCGGCTAAATTTTTGACTGCACAACCATACCCTACTTCAAACTTATTTTTTGCTGAAGTGTCAAAAGTTCAGGTGGAGTTAACACATGCGGCCTTCAACCAGGATCCTTTCCTTAGCAGTTTGATTTTCTCTTTGCATGACAGCTTTGACCAATATTGGAGAGAGAGCTGCCTCATCTTGGCAACTGCCGCTGCAATGGACCCAAGGCATAAAATGAAACTTGTGGAATTCACCTTTGCTAAGATATTTGGTGAGAGTGCTGAGGCATGGATAAGATTAGTTAAGGATGGTCTTCACGAACTATTCATTGAATATAGCACCCAAATGTTTCTTACAGAAACAAATGGTGATGATGGGGTTAACATTATGATAAAAGAAACATGTCAAGAAGGGCCTATTGACAACGCACTTTTTGTTGATGAGGATGGATTGTCCGACTTTGAATTTTGTATGTCTGATTTTACTGGTAACCCACAGTTTaagtcagaattggatgagtatctggaagagcctccgctgactggagtagaagattttgatattctgagctggtggaaagtaaatggattgaagtacccgacattgTCTAGAATCGCATCTGATATTTTGTCTTTACCAGTATCCACTCTGACTGTAGATTCTGTTTTTGACACAGAAATTAGAAAGATGGATAGCTACCGTAGTTCTTTAAGCTCCCTGACTCTCGAGGCCCTTATTTGTGCCAAGGATTGGATCCGGTCTGAAGGGTTATAG 1992 0.38 MEFDARVTPVNNDEIPDPGVLLNKQRRKKSIVWEYFTVEAVGFGCSRAFCKQCRKSFSYISNSKLAGTSHLKRHISLGICQVLREKNLQSPYPKTGGSQDTANPPKKRPRATPRFAGNSISFDQQRCNLDIAKMIILHDYPLHIVEQPGFINFVRILQPQFNPLCLKSVEGDCVAMYLRKKQNLLNIINGIPGQVNLTLDFWTSNQTMGYFFVRGHFIDNDWNLHRPILNVVSVPFPDSADSLNQTLVICLSDWHLEGRLFTLALDKSFSSEIVIENLRGLLSVKNPAILNGQLLNWNCYARVLSRLAAHALWIMRETVSNVRDSVKYVKSSESQEEKFIKLKQQLQVPSMMDLSIDDPCKWDTTYHMLVAACEIKEVFACLDTTDPGYRMNLTMGDWKRVETLCTYLKYLYDAAKFLTAQPYPTSNLFFAEVSKVQVELTHAAFNQDPFLSSLIFSLHDSFDQYWRESCLILATAAAMDPRHKMKLVEFTFAKIFGESAEAWIRLVKDGLHELFIEYSTQMFLTETNGDDGVNIMIKETCQEGPIDNALFVDEDGLSDFEFCMSDFTGNPQFKSELDEYLEEPPLTGVEDFDILSWWKVNGLKYPTLSRIASDILSLPVSTLTVDSVFDTEIRKMDSYRSSLSSLTLEALICAKDWIRSEGL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00140 663 PANTHER BED FINGER-RELATED 22 661 IPR045259 -
Cca11g00140 663 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 22 661 - -
Cca11g00140 663 ProSiteProfiles Zinc finger BED-type profile. 27 87 IPR003656 GO:0003677
Cca11g00140 663 Pfam Domain of unknown function (DUF4413) 421 518 IPR025525 GO:0003677
Cca11g00140 663 SUPERFAMILY beta-beta-alpha zinc fingers 30 77 IPR036236 -
Cca11g00140 663 MobiDBLite consensus disorder prediction 89 115 - -
Cca11g00140 663 SMART bed5 27 83 - -
Cca11g00140 663 Pfam hAT family C-terminal dimerisation region 576 658 IPR008906 GO:0046983
Cca11g00140 663 SUPERFAMILY Ribonuclease H-like 192 660 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00140 Cca-Chr11 1722642 1728965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00140 - - ccaj:109817373 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00140 11 1722642 1728965 Cca11g00140 11 1722642 1728965 ECH
Cca10g00080 10 889711 892919 Cca11g00140 11 1722642 1728965 PCT