Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00080 ATGGAATTTAATATGCCTGATACAGAAACACAACAAAATAGCAGGAGGAGAAAGAAATCTACCGTCTGGGAACACTTCACTGTGAAAAGTGATGGACCTGGATGTGCCAAGGCTTACTGTAAAAAATGCAAAAAGTCATTTGCATATCTAAAAGATTCAAAACAGGCTGGCACTAGTCATCTCAAGAGACACATTTCTCTGGGAATCTGTCAGAAAAATCAACAAACCCCCTGTTCCAAAACTGATGTCAGTCCACCAAAGAAACGGCCTAGAGCAAAACCTTGCTTAGCTATCTCATTTGATCAGGAGCGTTGCAACAGTAATATTGCTAAAATGATTATTTTACATGACTATCCCCTTCATATAGTTGAACACCAAGGTTTCATTGATTTTGTTCGAACACTTCAACCCCAGTTCAATCCACTGAGCTTTAATGCTATTCAAGGGAATTGTGTTGGTATGTACCTCAGAGAGAAGCAAAACCTACTGAATCTTATTGATGGGATTCCTGGACGAGTCAACCTCACTCTGGACTTATGGACTTCAAACCAAACATCGGCCTTTGTTTTCCTTCGAGGACACTTCGTTGATGGTAATTGGAATTTACATCATCCTATTCTAAATGTATTCATGGTACCATTTCCTGATTCCGGCTGTTCCTTAAATCAAGCTATAGTGAACTGCTTAAGTGATTGGCATTTGAAGGGGCGGCTATTTACTCTTGCACTTGATAAATTCTTCTCCAATGAGACATTGATGGAAAATCTGAGAAGTCTCCTCTCTTTCAAGAATCCTGTGGTTCTCAGTGGTCAATTTTTAAGTCAGAACTGTTATGCTCGTGTAATTAGTCGCCTTGTATCAGATGCACTATCAGCTATGAGAGAAACTATTGATAAAGTTCGGGAGAGTGTGAAGTATGTGAAATCTTCTAAATCTAATGAAAGGAAGTTTTTTGAGCTGAGGCAACAACTTCAAGTCCCTAGTATGATGGACCTTTTAATTGATGACCGAAATAAATGGGACACAATTTACCTTATGCTTGTTGCTGCTTGTGAATTAAAGGAAGTTTTTGCATGCTTTGATGCCGCTGATCCTGATTTCAGAATGACTGTGACATTGGATGAATGGAAGCAGGTGGAAACTCTTTGCGCATATTTAAAGTTCTTGTATGATGCAGCTAACATTTTAACTGTTCAACCATACCCAACTGCGAATGTATTTTTCCTTGAAGTGTCAAAGCTTCAGGTAGAGTTGACTTGTGCAGCCTTAAGCCATGATCCTTTCTGTAGTCGTTTGATTATGCCTTTGCGAGAGAAGTTTGATCTATATTGGAAAGAAAGCTGCTTCATCTTGGCGGTTGCTGTAGTTATGGATCCGAGGTATAAAATGAAACTGGTGGAATCCACCTTTGTTAAGATATTTGGTGAGAATGCTGACCATTGGATAAGAATTGTTGAGAATGGTCTTAATGAACTGTTCCTTGAATATAATATCATACAAGTGCTTCCTTTTACAGCAACAAATGACGATGAAGGGAATGATGCTGTGATAAAGGCAGAGTTATTTCCGGATGGGTCATTTGATGGATCTCTTTTTGCTGCTGAAGATGGACTTTCTGATATTGAACTTTATATATCTGATTTAACATGTAACCAGCAATTTAAGTCAGAACTGGATGAGTATCTTGAAGAGCCTTTAGAACCCAGAGTACAAGAATTCGATATTCTGAGCTGGTGGAGAATAAACGGATTCAAGTACCCAACATTGTCTAGACTGGCATCTGATATTTTGTGTATGCCAGTATCCACCCTCTCAGCAGATTCTGTTTTTGATACTGAAATTAGAAAAATGGATAGCTACCGGAGTTCATTAGATTCTTTGACTCTTGAGGCCCTTATTTGTACCAAGGATTGGTTCCAGTATAAATCGTTGCCCATCAATGTTCCAAATACACTTATCAAAGTTGAATGCTAG 1974 0.387 MEFNMPDTETQQNSRRRKKSTVWEHFTVKSDGPGCAKAYCKKCKKSFAYLKDSKQAGTSHLKRHISLGICQKNQQTPCSKTDVSPPKKRPRAKPCLAISFDQERCNSNIAKMIILHDYPLHIVEHQGFIDFVRTLQPQFNPLSFNAIQGNCVGMYLREKQNLLNLIDGIPGRVNLTLDLWTSNQTSAFVFLRGHFVDGNWNLHHPILNVFMVPFPDSGCSLNQAIVNCLSDWHLKGRLFTLALDKFFSNETLMENLRSLLSFKNPVVLSGQFLSQNCYARVISRLVSDALSAMRETIDKVRESVKYVKSSKSNERKFFELRQQLQVPSMMDLLIDDRNKWDTIYLMLVAACELKEVFACFDAADPDFRMTVTLDEWKQVETLCAYLKFLYDAANILTVQPYPTANVFFLEVSKLQVELTCAALSHDPFCSRLIMPLREKFDLYWKESCFILAVAVVMDPRYKMKLVESTFVKIFGENADHWIRIVENGLNELFLEYNIIQVLPFTATNDDEGNDAVIKAELFPDGSFDGSLFAAEDGLSDIELYISDLTCNQQFKSELDEYLEEPLEPRVQEFDILSWWRINGFKYPTLSRLASDILCMPVSTLSADSVFDTEIRKMDSYRSSLDSLTLEALICTKDWFQYKSLPINVPNTLIKVEC 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00080 657 Pfam Domain of unknown function (DUF4413) 399 496 IPR025525 GO:0003677
Cca10g00080 657 ProSiteProfiles Zinc finger BED-type profile. 17 77 IPR003656 GO:0003677
Cca10g00080 657 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g00080 657 PANTHER BED FINGER-RELATED 7 646 IPR045259 -
Cca10g00080 657 SMART bed5 17 73 - -
Cca10g00080 657 Pfam hAT family C-terminal dimerisation region 557 639 IPR008906 GO:0046983
Cca10g00080 657 SUPERFAMILY Ribonuclease H-like 166 641 IPR012337 -
Cca10g00080 657 SUPERFAMILY beta-beta-alpha zinc fingers 20 67 IPR036236 -
Cca10g00080 657 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 7 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00080 Cca-Chr10 889711 892919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00080 - - gmx:106796308 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00080 10 889711 892919 Cca10g00080 10 889711 892919 ECH
Cca10g00080 10 889711 892919 Cca11g00140 11 1722642 1728965 PCT