Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00130 ATGTCGTCTCTTAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTTGATGAGGAAAAGTTCAAGGAGACTGTGCACAAGCTTGAGCAGGAGTCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGGAATTGGGACGAAGTGGAAAAATACCTCTCTGGTTTCACAAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCATTAGATAAGCATGACCGGTCCAAAGCTGTAGAAATATTGGTGAAGGATTTGAAAGGAAATGAGCAGTTGTCTAAGTATGGTGATACAAAGTCCGCCCGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACCCTCATCAATCAAAGCTTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCAGATATAAAAACTCTTTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGTGCTCCTTCACCTGCTAATAATCCACTACTAGGTTCCTTGCCTAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAGCCTACGCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCACGGTAGCACATGCTGCAGTATCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCGATCCCTGCTTCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATTTCAGATGAGGTGAATCTACCTGTCAATGTGTTGTCAGCAACATTCCCAGGTCATGGTCAGCATAGTCAAGCTTTTAATGCACCTGATGACATACCTAAGGCTGTCGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGAAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCGGGTGTTTCTGTCAATCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTATCATGGTGGGGAGGAAatacgacaccacctggagATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTCTCCCATCCAAATAAGCAACTATGTGTGATAACTTGTGGTGATGATAAGACCATTAAGGTATGGGATGCTGCTTCGGGTGCAAGGCAGTATATTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGTCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCAGGTCGATGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGAGGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGAACTTATCAAGGATTTCGTAAACGATCTTTGGGAGTTGTGCAATTTGATACAACCAAAAATCGGTTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTTCCAGCAAGCCCACGTATTCGTTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCGAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGTTTGTTGCGTACACTAGAGAATTCTTCATATGATGCATCAAGACAACCAGAAGTCTTGGCAAAGCCAACAATTAATCCAATTTctgctgctgctgctgctgcAACCAGTGCTGCACTGGCAGAGAGGGCTTCGTCTGTAGTAGCTATTGCCGGAATGAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCGAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCTGAGAATGTTAGAGTAAACAAGATATCAAGGTTGATATATACAAATTCTGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTTTGGAAATGGCAGCGAAGTGAGCGTAACTCGTCTGGCAAGGCCACTGCTACTTTGCAACCTCAGTTGTGGCAACCATCTAGTGGCATCCTGATGACCAATGACATTGCTGATAGCAATCCCGAGGATGCTGTACCCTGCTTTGCCTTGTCCAAAAATGACTCGTACGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTCAATATGATGACTTTTAAGACTATGACAACTTTCATGCCTCCGCCTCCTGCAGCAACCTTTCTAGCTTTCCATCCTCAAGATAACAATATTATTGCCATAGGCATGGATGATTCCTCTATTCAAATATACAATGTCCGTGTTGACGAGGTTAAAAGCAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTACAGCTTCCTCCTGGGAGGACACCACCAGCACAGTCTGATACTCGTGTACAGTTTCATCTAGATCAATTACAATTCTTGGTTGTACATGAAACTCAGCTCGCCATTTATGAAGCAACAAAACTAGATGGTCTAAAACAGTGGTTCACGCGAGATTCATCCGCACCAATATCACATGCAACTTACTCATGTGATAGCCAGCTGATATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGTTGTCGTATCAATCCTTCTTCTTATCTTCCTTCAAGTGTCAGTTCCAACGTACAACCGCTTGTAATCGCCGCACACCCACAAGAACCAAATCAGTTTGCTGTAGGTCTGTCAGATGGGGGAGTTCATGTTTTTGAACCCCTTGAATCTGAGGGTAAGTGGGGTGTGCCTCCTCCTATAGAGAATGGGTCAGCAAGCAATGTGGCAGCTACTTCAGTTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3336 0.4218 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKGNEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPASLKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGEEIRHHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGARQYIFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSSYDASRQPEVLAKPTINPISAAAAAATSAALAERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHLDQLQFLVVHETQLAIYEATKLDGLKQWFTRDSSAPISHATYSCDSQLIYASFLDATICVFSASNLRLRCRINPSSYLPSSVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00130 1111 Gene3D - 750 1100 IPR015943 GO:0005515
Cca11g00130 1111 Gene3D - 527 666 IPR015943 GO:0005515
Cca11g00130 1111 Gene3D - 295 525 IPR015943 GO:0005515
Cca11g00130 1111 SUPERFAMILY Nucleoporin domain 961 1086 - -
Cca11g00130 1111 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 394 935 IPR011047 -
Cca11g00130 1111 MobiDBLite consensus disorder prediction 1082 1111 - -
Cca11g00130 1111 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 102 IPR027728 GO:0006355
Cca11g00130 1111 SMART Lish 4 36 IPR006594 GO:0005515
Cca11g00130 1111 MobiDBLite consensus disorder prediction 262 281 - -
Cca11g00130 1111 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Cca11g00130 1111 Pfam WD domain, G-beta repeat 431 469 IPR001680 GO:0005515
Cca11g00130 1111 Pfam WD domain, G-beta repeat 897 930 IPR001680 GO:0005515
Cca11g00130 1111 ProSitePatterns Trp-Asp (WD) repeats signature. 456 470 IPR019775 -
Cca11g00130 1111 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Cca11g00130 1111 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 102 - -
Cca11g00130 1111 MobiDBLite consensus disorder prediction 1093 1111 - -
Cca11g00130 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 898 939 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 848 888 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 562 602 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 383 422 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 891 930 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 808 845 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 472 513 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 322 361 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 516 559 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 1036 1075 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 428 469 IPR001680 GO:0005515
Cca11g00130 1111 SMART WD40_4 983 1023 IPR001680 GO:0005515
Cca11g00130 1111 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 898 930 - -
Cca11g00130 1111 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 102 1111 - -
Cca11g00130 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 611 IPR001680 GO:0005515
Cca11g00130 1111 SMART ctlh 34 92 IPR006595 -
Cca11g00130 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 478 IPR001680 GO:0005515
Cca11g00130 1111 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 102 1111 IPR027728 GO:0006355
Cca11g00130 1111 SUPERFAMILY Putative isomerase YbhE 326 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00130 Cca-Chr11 1596188 1603209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00130 433 646 Miscellaneous Gene Families AT5G08390 23.288 2.32e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00130 - - gmx:100795759 2125.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00130 11 1596188 1603209 Cca10g00073 10 817877 818582 ECH
Cca11g00130 11 1596188 1603209 Cca11g00130 11 1596188 1603209 ECH