Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00073 ATGTCATCTCTCAGTAGGGAGTTGGTGTTCTTGATCTTGCAGTTTCTTGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAGCAGGAGTCTGGGTTTTTCTTTAACATGAAGTATTTTGAGGATGAAGTGCACAATGGTAATTGGGATGAGGTTGAGAGGTATCTCTCTGGTTTTACCAAAGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAAGCATTAGATAAACATGATCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTCTTTGCCACATTTAATGAAGAGCTGTTTAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGTATGCATATAATTCTTAG 393 0.3664 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRYAYNS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00073 130 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 126 - -
Cca10g00073 130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Cca10g00073 130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 126 IPR027728 GO:0006355
Cca10g00073 130 SMART Lish 4 36 IPR006594 GO:0005515
Cca10g00073 130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Cca10g00073 130 Pfam LisH-like dimerisation domain 5 33 - -
Cca10g00073 130 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00073 Cca-Chr10 817877 818582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00073 - - ccaj:109807218 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00130 11 1596188 1603209 Cca10g00073 10 817877 818582 ECH
Cca10g00073 10 817877 818582 Cca10g00073 10 817877 818582 ECH