Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00127 ATGGTTTGGGCAAGGACGCAGGGACAAGCCCTCTCTCTTATAAATCCTCAACAAACCTCCCTTCGGAGGAGGCGTCGCCGGACCAACGATTCCTCTCTCCGCCACCACGGTGCTCCAGGGAGTTTGAATTTGATGGATTCCAGTAATTGGAGAACTAATCAAGGAACTAACCCCACTATGGATACAAGTGATTGGAGAGCTCAATTACCACCTGAAGCACGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAAACATCTTCCTGTTTCTGGTCCTGATGGATTGCATGAACTTCGGAAGATTGCTCAAAGGTTTGAAGACAAGATTTTTACTGCTGCTATAAGCCAGCCTGATTATCTTCGGAAAATATCTTTAAAGATGCTTACAATGGAAAATAAATCCCAAAATACCTTGGGTAGCAATATGCCACCAAATCAAGTTGGCCCTAGCAATAAACCTCCTGATCAAGGACTTGTTTTGCAGCCTCAAGTTCAAAATCATGGGCAACAACATTCTATTCCTTTGCCTAATCAGCTCCAGCCACATCAGCAGCTTCTATCTCAAAACATTCAAACTAATGTTGCGTCTCAACCTAACCTTGCACCTGTATCTAGTCTATCCCTGACTCCCAGCCAAAATATTGTCCAGAATTCCAACATACAGAATATACCTGGGCCAAATTCAGTTGGGAGCACTATTAGCCAAAATTCCAACTTACAGAATATGTTTGCTGGTTCTCAGAGACAAATGCCAGGAAGGCAGCAGATTGCTTCCCCACAACAACAGCTGCAAGCACAGAATCAACAACAATATCTTTACAACCAGCAGCTTTTGAAGCAGAAGCTCCACTTGCAATCTCAGATgcagcagcagcagcagcaacaacaaaaccttctgcaacCAAATCAGTTGCAATCTTCTCAGCAATCTGTTATGCAAACTTCATCTGTTATGCAGCCCTCCATGATGCAAACACCTTCTCTACCTAGCCTTCCACAGAATCAGCAGTCTACTAATGTTCAACAGTCAACGCAGTCCATGCAGCAGCAACATTCACAAGTTATCAGGCATCAACAACAAACACCGGTGACTCAACAGCAACAACAGCTTATGGGGCCTCAGTCAAATACGACAAACATGCAACATGCGCAGATGCTTGGGCAACAGAACAATGTTGGTGATATACAGCAATCACAGAGGATGCTTTCACAACAGAATAATCTTGCGAACATGCAACAGCGACAGCAACAGTTAATAAATCAGCAAAACAATCCATCTAATATACATCAACAATTGGGAAACAATGGCCCTGGGTTACAGCAGCAACATTTGCTTGGACATGATTCTGGCAACACAGAGATGCAAACAAGTCATCACTCTGCACACATGCTGCAACAATCAAAGGTTCAAATGCAGCAACAATCACAACAAAATACATCAAATTTGTTGCTACCTCATGTACAGCAGTCACAGCCATTGGGTTCACAACAACAATTAATGTCACAGATTCACACTCAGCCAGCACAGTTGCAACAGCACTTGGGTTTGCAGCAGCAGCCAAATCCCTCACAACGAGATATGCAGCAAAGAATTCAAGCATCAGGGTCCTTGCTTCAACAACAAAATGTTCTTGATCAACAAAAACAGTTATATCAATCTCAAAGAACTCTTCCAGAAACGTCAGCAACTTCTCTGGATTCTACAACACAGACTGCACAACCAAGTGGGGTAGATTGGCAAGAAGAAGTGTACCAGAAGCTCCAAACCATGAAAGAAAGTTACCTGCCAGAGATGAATGAAATGTACCAAAAAATTGCTAACAAACTGCAGAAGCACGATTCTCTTCCCCAACAGCCGAAGTCAGAGCAGATTGAAAAGCTGAGGGCATATAAAATGATGTTGGAGCGTATGATGGAAATCCTACAGATTCCCAAGAACAACATTTTACCTAATTTCAAGGAAAAACTGGGATCATATGAGAAGCAGATTATAAATCTCATAAATTCAAATAGACCCAGGAAAGGCATGTCTTCAGTGCAGCTAGGACAGCTTCCCCCAACTCATATGTCCTCCATCCAACAGCCACAATCTCAAGTTACTCAAGTACAGTCTCATGAAAATCAAATGAACTCTCAGATGCAGTCAACAAATTTACAAGGTTCTGTACCAACCATGCAACAGAATAACATTGCAAGCTTGCAGCACAATTCTTTGTCTAGTGTATCAACGGGACAACAGAATATGATGAATTCAATGCAACCTGGAACTAATTTAGATTCTGGACAAGTAAATTCTGTGAACTCCCTTCAACAGGTTCCAATGAGCTCCCTCCAACAAAACCCTGCTACTACTGCTCAACAGACTAACAATAATTCCTTATCATCGCAAGGTGGGGCAAACGTGATTCAACCAAATGCCCTTCAGTCAGGTTCTAGTGCACTTCAACACCAACTGAAGCTTCAGCAGGAACAGCAGATGCTGCAGAGTCAACAATTTAAACAACAATATCAGCAGCGACAACAATTGATGCAGAGGCAGCTCCTGCAGCAGCAGCAGCAGCAACTACACCATGCAGCAAAGCCACAGCTATCTGGGCAATTGCAGACACATCAAATGTCTCAGCTTCACCAAATGAATGATATAAATGATATAAAAATGCGACAAGGAATGGTTGTTAAACCAGGAGTCTTTCAGCAACATCTTGCGTCGGGTCAACACTCAACGTATTCCCATCAACAGCTGAAACAAGGGAGTGCATTTCCTGTTTCATCACCACAACTGCTTCAGGCTGCATCTCCTCAGGTTCAGCAACACTCATCTCCCCAGTTTGACCAGCAAAATCATCTCCCATCTAAAACAAAAGTTGGAACTCCTCTGCAATCTTCTAATTCACCCTTTGTGGGACCTACCCCTTCACCTCCTTTGGCTCCATTTCCTATGCCAGGAGAATCTGAGAAGTCCATTCCTTGTGTTTCATCAATATCAAATGCTGCAAATATTGGACATCAACAAACAGGGGGTGCAGTAGCACCAGGTCAATCACTTGCCATTGGGACTCCTGGGATATCAGCCTCTCCTTTATTGGCAGAATTCAGTGGTTCAGATGGTGTGCATGGTAATACTTTAGCCACCACTTCTGGGAAGTCAACTGTTACAGTGCAGCCTGTTGAACACTTAATTAATGTGGTGAAATCAATTTCTTCTAAAACATTAAGTGCTGCGGTCAGGGATATTGGTTCAGTTGTCGTCATGAATGATAGAATAGCAGGATCAGCTCCAGGTAATGGATCCAGAGCAGCTGTTGGTGAAGACTTGGTTTCCATGACTAATTGTCGTCTTCAGGCTAGAAATTTCATTACTCAAGATGGTTCCAATGGAATTAAGAGGATGAAACGTTACATCAGTGCTATACCGTTGAATGCTGTATCATCTGCTGGTAGCATGCATGATAGTATCAAGCACATAACTGCTTCTGAGACTTCTGATCTGGAGTCAACTGCAACATCCAGTGTCAAGAAACCAAAGATTGAGGTTAATCATGCCCTTTTGGAAGAAATAAGGGAGATCAATCACCAACTTATTGACACAGTAGTGGACATAAGCGATGAAGATGTTTTTGATCCAACAgctgctgttgctgctgctgAAGGTGCAGAAGGGATCATTGTCAAATGCTCTTTCATTGCTGTGGCTCTCAGCCCTAGCTTAAAATCCCAATATGCTTCAGCCCAGATGGTGGATTCCCACTTCTGA 3759 0.4209 MVWARTQGQALSLINPQQTSLRRRRRRTNDSSLRHHGAPGSLNLMDSSNWRTNQGTNPTMDTSDWRAQLPPEARQRIVNKIMDTLKKHLPVSGPDGLHELRKIAQRFEDKIFTAAISQPDYLRKISLKMLTMENKSQNTLGSNMPPNQVGPSNKPPDQGLVLQPQVQNHGQQHSIPLPNQLQPHQQLLSQNIQTNVASQPNLAPVSSLSLTPSQNIVQNSNIQNIPGPNSVGSTISQNSNLQNMFAGSQRQMPGRQQIASPQQQLQAQNQQQYLYNQQLLKQKLHLQSQMQQQQQQQQNLLQPNQLQSSQQSVMQTSSVMQPSMMQTPSLPSLPQNQQSTNVQQSTQSMQQQHSQVIRHQQQTPVTQQQQQLMGPQSNTTNMQHAQMLGQQNNVGDIQQSQRMLSQQNNLANMQQRQQQLINQQNNPSNIHQQLGNNGPGLQQQHLLGHDSGNTEMQTSHHSAHMLQQSKVQMQQQSQQNTSNLLLPHVQQSQPLGSQQQLMSQIHTQPAQLQQHLGLQQQPNPSQRDMQQRIQASGSLLQQQNVLDQQKQLYQSQRTLPETSATSLDSTTQTAQPSGVDWQEEVYQKLQTMKESYLPEMNEMYQKIANKLQKHDSLPQQPKSEQIEKLRAYKMMLERMMEILQIPKNNILPNFKEKLGSYEKQIINLINSNRPRKGMSSVQLGQLPPTHMSSIQQPQSQVTQVQSHENQMNSQMQSTNLQGSVPTMQQNNIASLQHNSLSSVSTGQQNMMNSMQPGTNLDSGQVNSVNSLQQVPMSSLQQNPATTAQQTNNNSLSSQGGANVIQPNALQSGSSALQHQLKLQQEQQMLQSQQFKQQYQQRQQLMQRQLLQQQQQQLHHAAKPQLSGQLQTHQMSQLHQMNDINDIKMRQGMVVKPGVFQQHLASGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQVQQHSSPQFDQQNHLPSKTKVGTPLQSSNSPFVGPTPSPPLAPFPMPGESEKSIPCVSSISNAANIGHQQTGGAVAPGQSLAIGTPGISASPLLAEFSGSDGVHGNTLATTSGKSTVTVQPVEHLINVVKSISSKTLSAAVRDIGSVVVMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGSNGIKRMKRYISAIPLNAVSSAGSMHDSIKHITASETSDLESTATSSVKKPKIEVNHALLEEIREINHQLIDTVVDISDEDVFDPTAAVAAAEGAEGIIVKCSFIAVALSPSLKSQYASAQMVDSHF 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00127 1252 MobiDBLite consensus disorder prediction 931 968 - -
Cca11g00127 1252 Coils Coil 403 423 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 42 64 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 557 579 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 300 377 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 493 531 - -
Cca11g00127 1252 Pfam KIX domain 63 142 IPR036546 -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 691 721 - -
Cca11g00127 1252 Gene3D Coactivator CBP, KIX domain 64 141 IPR036529 GO:0003712|GO:0006355
Cca11g00127 1252 Coils Coil 835 855 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 742 805 - -
Cca11g00127 1252 Coils Coil 276 296 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 931 989 - -
Cca11g00127 1252 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 45 1246 IPR044661 GO:0003713|GO:0031490
Cca11g00127 1252 MobiDBLite consensus disorder prediction 16 65 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 427 480 - -
Cca11g00127 1252 MobiDBLite consensus disorder prediction 136 161 - -
Cca11g00127 1252 SUPERFAMILY Kix domain of CBP (creb binding protein) 62 136 IPR036529 GO:0003712|GO:0006355
Cca11g00127 1252 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 45 1246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00127 Cca-Chr11 1524267 1539839 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00127 K14972 - gmx:100805336 1682.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00067 10 755653 765922 Cca11g00127 11 1524267 1539839 PCT