Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00067 ATGGATAATAGTGATTGGAGAAGTGGACTGCAGCCCGAGTCACGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAGACATCTTCCTGTTTCTGGGCAAGAGGGATTGCATGAACTTCGGAAGATTGCTCAAAGGTTTGAAGAGAAAATTTTTACTGCTGCAACAACCCAGGCTGATTATCTACGGAAAATATCTCTGAAGATGCTTACAATGGAGTCTAAATCCCAAGGCACAATGGCCCCCAACATACCTCCAAATCAAGGTGGTCCTAGTAATAAACCTCCTGATCCCACTCCAGGACTTGTTATTCCGCCCCAAGTTCACAATCCAGGTCAGCAACATCCTATTCCTATGCCCAATCAAACTCAGACACGCCAACAGCTTCTAGCTCAGAACATTCAAAATAATATTGCATCTCAACCTTCGGGTCTAGGCCAGACTACCATCCAAAATGTTGGCCAGAATAATCCCAACATGCAGAATATACCTGGACAGAATTCGGTGGGGAGCAACATGGGCCAGAATTCCAACATGCAAAATATGTTTGGTGGTTCCCAGAGACAAATTccagggagaccgcaggttgttccccaaccacaacagcagcagtcacaaaatccacacccgtatctgtatcaacaacaatttcaacagcagcttttgaggcagaagctccatcaacaacaacagcagcagcaacaacaacaacagcagaaccttcttcaatcaaatcagttgcaaTCTTCTCAGCAACCTGTCATCCAAACATCTTCTGTTATGCAGCAGCCTTCCATAATGCAAGCATCTTCTCTACCTAGCATTCAGCACAACCAACAGTCTAATAATGTTCAACAATCAACGCAATCCGTGCTTCAGCAACACTCACAAGTTATTAGGcaacagcaaccacaacagacttcaatcattcatcaacaacaaACACCGATTACTCAACAGTCAGTGTTacctccacaacagcagcagcagcagcagcaacagcttatgggagcacaggcaaatgcaacaAACATGCAACATAGCCAAATACTTGGGACACAAAATAATGTTGGTGATTTGCAGCAATCACAGAGGTTACTTGCACAGCAGAATAATCTTTCAAACCTGCAACAGCAACAGTTAATAAATCAGCAAAACAGCCTATCAAATATACACCAACAGTTGGGTAATAATGTCCCAGGTTTACAGCCACAGCAGGTTCTTGGACCACAATCTAGCAACTCAGGCATGCAAACTAGTCAGCACTCTGCTCATGTGCTACAACAATCACAACAAAATGCATCGAATTTATTAACATCTCAAGCACAGCAGTCACAACCTCAAGCACCACAGCAGCAATTGATGCCACAAATTCAATCCCAGCCTGCACAACTGCAACAACAGTTGGGTTTGCAACAGCAGCCAAATTCCTTGCAACGAGATATGCAGCAAAGACTTCAGGCCTCAGGTTCCTTACTTCAACAACCAAGTGTTCTTGATCAACAAAAGCAGTTATATCAATCACAAAGACCCCTTCCAGAAACTTCTTCAACTTCTCTGGATTCAACAGCACAGACTGGACAGTCAAGTGGGGGTGATTGGCAAGAAGAAGTTTATCAAAAGATAAAATCCATGAAAGAAAGTTACTTGCCAGAGTTGAATGAAATGTACCAAAAAATCGATGCAAAACTTCAGCAGCATGATTCCCTTCCACAACAACCAAAACCAGATCAGCTTGAAAAGCTGAAGGTATTTAAAATGATGCTGGAACGTATTATAAAATTCCTTCAGGTTTCCAAGAGCAACGTCTTACCTAATTTCAAGGAGAAACTGGGCTCATATGAGAAGCAGATTATAAATTTCATAAATACAAATAGACCTAGGAAAACCATGCCTGGACAGCTTCCCCCACCTCATATGCATTCCATGTCTCAGACACAAACTCAAGTGCAGCCTCATGAAAATCAAATGAACTCTCAGTTGCAAACAACAAATATGCAAGGTTCTGTAGCAACAATGCAGCAGAATAATATGGCAAGCATGCAGCAGAACTCTCTGTCTGGTGTATCTACAGCACAACAGAGTAAGATGAATTCAATGCAGTCAAGTACCAATTTAGACTCAGGACAAGGAAATGCTGTGAACTCCCTACAACAAGTTCCAGTGAGCTCGCTTCAACAAAACCCTGTTAGTGCTCCTCAACAAACTAATGTTAACTCCTTGTCTTCACAAGCTGGGGTAAATGGAATCCAACCAAATCTTAATCCTCTTCAGCCAGGTTCTAGTGTCAAGCCAGGGGTCTTTCCGCAACATCTTTCTTCCAGCCAACGTTCAGCTTATCCCCATCAACAAATGAAAGGGAGTCCTTTTCCTGTTTCTTCTCCCCAGCTCCTTCAGGCCACATCTCCTCAAATTCCACAACATTCATCTCCTCAGGTTGACCAACAAAACCACATGCCATCTCTCACAAAAGTTGCTACTCCTCTGCAATCTGCTAACTCACCTTTTGTAGTACCCACTCCTTCACCTCCCTTGGTCCCATCTCCTATGCCAGGGGATTCTGAAAAGCCCATTTCTGGTGTTTCATCAATTTCCAATGCTGCAAATATTGGATATCAACAAACAGGGGGCGCAGCAGCACCTTCTCAATCCCTTGCCATTGGAACACCTGGAATATCAGCCTCTCCTTTACTTGCAGAGTTCACTGTTCCTGATGGTGCTCATGGTAATGCTTTGGCACCCACTTCTGGAAAATCAACTGTTACAGAGCAGCCTATTGAGCGCCTAATCAAAGTGGTGAAATTGATGTCACAAAAAGCATTAAGTTCTGCTGTCAGTGATATTGGTTCAGTTGTCAGCATGAACGATAGGATAGCAGGATCAGCTCCAGGTAATGGATCCAGAGCTGCTGTTGGCGAAGATTTGGTTGCCATGACAAATTGTCGTCTTCAGGCAAGAAATTTTATCACCCAAGATGGTGCAAATGGAACTAGGAGGATGAAGCGCTACACCAACGCAACACCCTTGAATGTTGTATCTTCTGCGGGTAGCATGAATGACACTATCAAGCACTTGCCTGCTTCTGAGGTTTCAGATTTGGATTCAACTGCAACATCTAGATTCAAAAGGCCAAGGATTGAGGCTAATCATTCCCTTTTGGAAGAAATCAGGGAGGTTAATCAGCGACTTATTGACACGGTAGTAGACATAAGTAATGAAGAAGTTGATCCAACGGCAGCTGCTGCTGCTGAAGGAACAGAAGGGACCATTGTCAAATGTTCTTTCAATGCTGTGGCTCTCAGTCCGAGCTTGAAATCCCAATATGCTTCAGCACAGATGTCACCAATTCAACCCCTGCGCTTGCTTGTTCCTACAAATTATCCTAATTGTTCCCCCATACTCCTCGACAAGTTTCCAGTTGAATCCAGTAAGGAGAATGAAGATCTTTCAGTGAAAGCAAAGTCAAGGTTTAGCATATCGTTGCGAAGTTTATCACAACCTATGTCCCTTGGGGAGATAGCAAGGACTTGGGATGTTTGTGCTCGCACAGTTATTTCGGAGCATGCACAACAGAGCGGTGGTGGGAGTTTCAGCTCTAAGTATGGGACTTGGGAGAATTGCTTGACCACTTGA 3636 0.4002 MDNSDWRSGLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQRFEEKIFTAATTQADYLRKISLKMLTMESKSQGTMAPNIPPNQGGPSNKPPDPTPGLVIPPQVHNPGQQHPIPMPNQTQTRQQLLAQNIQNNIASQPSGLGQTTIQNVGQNNPNMQNIPGQNSVGSNMGQNSNMQNMFGGSQRQIPGRPQVVPQPQQQQSQNPHPYLYQQQFQQQLLRQKLHQQQQQQQQQQQQNLLQSNQLQSSQQPVIQTSSVMQQPSIMQASSLPSIQHNQQSNNVQQSTQSVLQQHSQVIRQQQPQQTSIIHQQQTPITQQSVLPPQQQQQQQQQLMGAQANATNMQHSQILGTQNNVGDLQQSQRLLAQQNNLSNLQQQQLINQQNSLSNIHQQLGNNVPGLQPQQVLGPQSSNSGMQTSQHSAHVLQQSQQNASNLLTSQAQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNSLQRDMQQRLQASGSLLQQPSVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIDAKLQQHDSLPQQPKPDQLEKLKVFKMMLERIIKFLQVSKSNVLPNFKEKLGSYEKQIINFINTNRPRKTMPGQLPPPHMHSMSQTQTQVQPHENQMNSQLQTTNMQGSVATMQQNNMASMQQNSLSGVSTAQQSKMNSMQSSTNLDSGQGNAVNSLQQVPVSSLQQNPVSAPQQTNVNSLSSQAGVNGIQPNLNPLQPGSSVKPGVFPQHLSSSQRSAYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHMPSLTKVATPLQSANSPFVVPTPSPPLVPSPMPGDSEKPISGVSSISNAANIGYQQTGGAAAPSQSLAIGTPGISASPLLAEFTVPDGAHGNALAPTSGKSTVTEQPIERLIKVVKLMSQKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVSSAGSMNDTIKHLPASEVSDLDSTATSRFKRPRIEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAEGTEGTIVKCSFNAVALSPSLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTT 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00067 1211 MobiDBLite consensus disorder prediction 625 657 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 744 819 - -
Cca10g00067 1211 Gene3D Coactivator CBP, KIX domain 5 82 IPR036529 GO:0003712|GO:0006355
Cca10g00067 1211 SUPERFAMILY Kix domain of CBP (creb binding protein) 4 76 IPR036529 GO:0003712|GO:0006355
Cca10g00067 1211 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 1 736 IPR044661 GO:0003713|GO:0031490
Cca10g00067 1211 MobiDBLite consensus disorder prediction 140 208 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 89 106 - -
Cca10g00067 1211 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 753 1211 IPR044661 GO:0003713|GO:0031490
Cca10g00067 1211 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 753 1211 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 506 535 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 768 819 - -
Cca10g00067 1211 Coils Coil 1054 1074 - -
Cca10g00067 1211 Coils Coil 220 240 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 681 714 - -
Cca10g00067 1211 Pfam KIX domain 4 81 IPR036546 -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 744 761 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 75 121 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 395 485 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 275 342 - -
Cca10g00067 1211 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 1 736 - -
Cca10g00067 1211 MobiDBLite consensus disorder prediction 640 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00067 Cca-Chr10 755653 765922 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00067 K14972 - gmx:100783762 1560.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00067 10 755653 765922 Cca11g00127 11 1524267 1539839 PCT