Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01227 ATGTCTCTCTTTGCTGCATTTTCCATTTGTAGAGTTGCCAAAGATGTAGCTGGAATTGCAGGAAATGTGTTTGCTTTTGGGTTGTTTGTGTCCCCCATACCCACATTTAGGAGGATTATGAGAAATGGGTCAACAGAGATGTTCTCAGGGTTGCCATATATTTATTCTCTTCTGAACTGCTTGATCTGCTTGTGGTATGGCACACCTCTCATATCTGCTGATAACTTGTTGATTACCACTGTTAATTCAATTGGAGCAGTCTTTCAGTTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAAGAAGGTGAGAATGTTTGGATTATTGCTAGCAGTTCTTGGCGTATTTGCAATCATATTATTTGGAAGCTTGCAAATAAATGACGCTCTAACGCGCCGTTTCTTTGTGGGATTCTTGAGCTGTGCATCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTAAATTGGTCATTCAGACAAAGAGTGTTGAGTTCATGCCATTTTATCTCTCACTTTCCACCTTCTTAATGAGCACCTCTTTCTTGCTTTATGGAATATTCAACAATGATGCCTTCATTTATGTGCCGAATGGGATAGGAACCATTTTGGGATTGATACAGTTGATATTGTACTTCTATTTCGAGAGTAAATCTAGAGAAAACTCCAGAGAACCTCTGATAGTGTCATATGCATGA 708 0.3856 MSLFAAFSICRVAKDVAGIAGNVFAFGLFVSPIPTFRRIMRNGSTEMFSGLPYIYSLLNCLICLWYGTPLISADNLLITTVNSIGAVFQFVYIILFLMYAEKAKKVRMFGLLLAVLGVFAIILFGSLQINDALTRRFFVGFLSCASLISMFASPLFIIKLVIQTKSVEFMPFYLSLSTFLMSTSFLLYGIFNNDAFIYVPNGIGTILGLIQLILYFYFESKSRENSREPLIVSYA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01227 235 PANTHER RAG1-ACTIVATING PROTEIN 1 9 235 - -
Cca10g01227 235 Pfam Sugar efflux transporter for intercellular exchange 138 222 IPR004316 GO:0016021
Cca10g01227 235 Pfam Sugar efflux transporter for intercellular exchange 17 103 IPR004316 GO:0016021
Cca10g01227 235 Gene3D - 138 229 - -
Cca10g01227 235 Gene3D - 11 106 - -
Cca10g01227 235 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET2 9 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01227 Cca-Chr10 16172636 16175950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01227 1 234 Miscellaneous Gene Families AT3G14770 69.787 9.81e-116 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01227 K15382 - gmx:100776187 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01227 10 16172636 16175950 Cca04g01562 04 22824876 22830116 ECH
Cca10g01227 10 16172636 16175950 Cca10g01227 10 16172636 16175950 ECH