Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01562 ATGTCTTTGTTTGGTGTTTATTCCATCAGCGAAGTTGGCAAGGATGTTGCTGGAGTTGCTGGGAACATCTTTGCTTTTGGGTTGTTTATATCCCCCATACCAACATTTAGGAGAATTATCAGAAATGGGTCAACAGAAATGTTCTCAGGGTTGCCATATTTTTACTCTCTCTTGAACTGCTTGATCTGTTTGTGGTATGGCACACCTCTGATATCACCTGACAATTTGTTGGTAACAACTGTTAATTCAATTGGAGCAGCCTTTCAACTTGTGTACATAATCCTCTTCTTGATGTATGCTGAGAAAGCAAGAAAGGTGAGAATGATTGGATTACTGATAGCAATTTTGGGCATATTTGCCATCATACTAGTTGGGAGCTTGCAAATTGATGACACTGTGATACGCCGAGTGTTTGTGGGATTCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCCTCTCCATTGTTTATAATTGTATGCTTGTCATTTCCTAGATATTCATCCATTTAA 510 0.3882 MSLFGVYSISEVGKDVAGVAGNIFAFGLFISPIPTFRRIIRNGSTEMFSGLPYFYSLLNCLICLWYGTPLISPDNLLVTTVNSIGAAFQLVYIILFLMYAEKARKVRMIGLLIAILGIFAIILVGSLQIDDTVIRRVFVGFLSCASLISMFASPLFIIVCLSFPRYSSI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01562 169 Gene3D - 11 106 - -
Cca04g01562 169 Pfam Sugar efflux transporter for intercellular exchange 18 103 IPR004316 GO:0016021
Cca04g01562 169 PANTHER RAG1-ACTIVATING PROTEIN 1 11 159 - -
Cca04g01562 169 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET2 11 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01562 Cca-Chr4 22824876 22830116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01562 1 158 Miscellaneous Gene Families AT3G14770 63.291 8.07e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01562 K15382 - gmx:100790469 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01227 10 16172636 16175950 Cca04g01562 04 22824876 22830116 ECH
Cca04g01562 04 22824876 22830116 Cca04g01562 04 22824876 22830116 ECH