Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01013 ATGGCCGCCACATTACCCTCCGATTACGACGGTCTCCGGTCGCCGCTGCTGCTGGCGGCGGCGAGGAAGCCGGCGACGGAGAAGCTGTGCATCGACGAGATGCTGCAGAAGCACTGCGGAGAGTTCGGGCGGTGGCAGCTGAAGCACTTCATCCTCACGAGTCTCGCGTGGGCGCTCGAGGCCTTCCACACCATGGTCATGATCTTCGCCGATCGTGAGCCTGACTGGACCTGCGTCGCCGGCGCCGCGTGCGACGGCGCAGGCGGCCTCTGCGGCCTCCCGGCGGAGTCGTGGGAGTGGGTCGGCGGGCCCAGCGGCTCCACCGTCTCCGATTGGGGTCTGATTTGTGGTGACAAGTTTAAGGTTGGACTCGTCCAGGCCGTGTTCTTCGCCGGCTGCATGATTGGTGCTGGAATATTTGGCCACCTCTCAGATTCCTCTTTAGGAAGGAAAGGCTCTCTGAGAGTGGTTTGTGCCCTAAACGCCATCTTCGGCTGCTTAACAGCGTTGTCACCAAACTATTGGATCTACGTCCTCCTCCGCCTCCTCACCGGCTTCAGCACCGGCGGCGTCGGTCTCTGCGCCTTCGTCCTCGCCACCGAACCAATCGGCCCGACGAAGCGCGGCACGGCGGGGATGTCCACCTTCTACTTCTTCTCCGGCGGCATAGCATTCCTCTCAGCCATTGCCTACATCTTCCAAACATGGCGCTATCTCTACATAGcctcctccatcccctccttcctctacatcatcctcgtcctTCCCTTTGTAACCGAGTCCCCAAGATGGTACCTCGTTCGCGGAAGAGTATCCGAAGCCATGAAAATCATGTCAACCATTGCTTCTTCCAACGGGAAGCACCTTCCCGACGGTGTTATCCTCGCACTTGATGAAGAAGCATCGGAGAAAACCAACCAAGGTTCAGGCCATGACGTCGTAGCATGCAATAACCAACACGAGGAAAACAAAGACGCGCTAGTTGGGTCCATCGTGGACGTGATTCGATCCCCTATAACTCGTTTAAGGTTGTTCCTAGCGGTGGCTCTTAACTTCGCAGCCTCCGTGGTGTACTATGGTCTCAGCTTAAACGTCGTGAACCTCGAAACGAACCTTTACATGAACGTGGTGCTGAATTCCGTGGCGGAGATGCCGGCGTTTACGATAACGGCGGTGCTCTTGGATAGGTTTGGACGGAAACCGTTAACGGTGGGGACGATGTGGTTTAGTGGGTTGTTTTGTTTGATAGGGAGTTTGGTGAGAAACGTGGGGGTGTGGAAGGTGGTGAGAATGGTGTGTGGTGTTTTGGGGATATTTGGGATGGCGGGGACTTATAATTTGTTGTTTATTTACACGGCGGAGCTGTTTCCGACGGTGGTGAGGAACGCGGCGCTTGGGTGCACCACTCAGGCGTCGCAAATGGGGGCCATATTGGCGCCGTTTGTTGTCGTTTTGGGAGGGTGGATGCCGTTTGCGGTGTTTGCAGCGTGTGGGATAGTGGGAGGGATGTTTGCGTTTTATCTTCCGGAGACGCTGAACAAACCTCTCTATGATACATTCAGTGGATTGGAAGCTGGACTTGCTTGA 1587 0.5482 MAATLPSDYDGLRSPLLLAAARKPATEKLCIDEMLQKHCGEFGRWQLKHFILTSLAWALEAFHTMVMIFADREPDWTCVAGAACDGAGGLCGLPAESWEWVGGPSGSTVSDWGLICGDKFKVGLVQAVFFAGCMIGAGIFGHLSDSSLGRKGSLRVVCALNAIFGCLTALSPNYWIYVLLRLLTGFSTGGVGLCAFVLATEPIGPTKRGTAGMSTFYFFSGGIAFLSAIAYIFQTWRYLYIASSIPSFLYIILVLPFVTESPRWYLVRGRVSEAMKIMSTIASSNGKHLPDGVILALDEEASEKTNQGSGHDVVACNNQHEENKDALVGSIVDVIRSPITRLRLFLAVALNFAASVVYYGLSLNVVNLETNLYMNVVLNSVAEMPAFTITAVLLDRFGRKPLTVGTMWFSGLFCLIGSLVRNVGVWKVVRMVCGVLGIFGMAGTYNLLFIYTAELFPTVVRNAALGCTTQASQMGAILAPFVVVLGGWMPFAVFAACGIVGGMFAFYLPETLNKPLYDTFSGLEAGLA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01013 528 Gene3D MFS general substrate transporter like domains 104 521 IPR036259 -
Cca10g01013 528 SUPERFAMILY MFS general substrate transporter 111 516 IPR036259 -
Cca10g01013 528 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 31 526 - -
Cca10g01013 528 ProSitePatterns Sugar transport proteins signature 1. 390 406 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca10g01013 528 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 31 526 - -
Cca10g01013 528 Pfam Sugar (and other) transporter 119 517 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca10g01013 528 ProSitePatterns Sugar transport proteins signature 2. 183 208 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca10g01013 528 ProSiteProfiles Major facilitator superfamily (MFS) profile. 49 513 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01013 Cca-Chr10 12293294 12297833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01013 6 524 Organic Solute Cotransporters AT3G20660 67.748 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01013 K08202 - gmx:100797665 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01013 10 12293294 12297833 Cca04g01292 04 16114296 16118742 PCT