Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01292 ATGCGAACCGCGTCGTTCTCCGATTCCTATGACCGTGTAGCGGATCCGTTCCGGTCACCGCTGCTGGCGGCGAAGGGCAGCGAGCCGGCGGCGGAGAAGCTGTGCATCGACGAGATGCTGCAGAGGCACTGCGGCGAGTTCGGGCGGTGGCAGCTGAAGCACTTCGTGCTGACGAGCCTGGCGTGGGCCCTGGAGGCGTTCCACACGATGGTGATGATATTCGCGGACCGCCAGCCGGAGTGGCGGTGCCGGGCCGGTTGGGCCTGCGAGGCGGGCGCGAAGAGCGTGTGCGGGCTTGAACCGGGCTCGTGGGAGTGGGTGGGAAGGTCGACTGTTACTGAGTGGGGATTGTTTTGCGGTGACAAGTATAAGGTTGGGCTTGTTCAGGCCGTCTTCTTCGGCGGCTGCATGATCGGTGCTGGAATATTCGGTCACCTCTCAGATTCCTTCCTCGGAAGAAAAGGCTCTCTCACTGTGGTGTGTGCCCTAAACACCGTATTCGGCACCTTGACAGCCCTATCCCCCAACTTCTCCTCCTACGTCATTCTCCGCCTCCTCACCGGTTGCAGCACCGGCGGCGTCGGCCTCTGCGCCTTCGTCCTCGCCACCGAGCCCGTTGGCCCCAAGGCACGCGGCGCCGCCGGCATGTCCACTTTCTACTTCTTCTCCTCCGGCATCGCCCTCATCTCCGCCATTGCTTATATCTTCCCCACGTGGCGCAAACTCTACATCGcctcctccctcccctccctcctcttcctcctcttcatcctccccttcatcTCGGAGTCCCCAAGATGGTACCTCGTTCGAGGAAAAACCAATGAAGCCACAAAAATCATGTCCAAAATCGCCACCTCTAATGGTGTCGATGTCAATTCCTTAAATGAATCTCAGTGTCAGACGTGTCACCTAGTAATGACCGGATCACTTATGGACATGATCCGATCACAGGTGACACGTCAGAGATTGATTCTAGCAGTAGTAATTAACTTCTTGTGCTCCGTGGTGTACTATGGGTTGAGTCTCAACGTGGTGAACATGGATACCAACCTTTACCTCACCGTGATACTGAACGCGGTGGCGGAGATGCCGGCGTTTATGATAACGGCGATGTTGCTGGACCGGTGGGGGAGGAAGCCGTTGACCATAGCGACGTTATGGTTCAGTGGGGCGTTTTGCCTCGTGGGAAGCTTGGTGAGCAACGTTGGGGTGTGGAAGGGTGTGAGAATGGCGTGTGGGGTTTTGGGGATTTTTGGGATGGCGGGGACGTATAATTTGCTGTTCATTTACACGGCGGAGCTGTTCCCGACGGTGGTGAGGAACGCCGCGCTGGGGTGCGCAACGCAGGCGGCGCAGATGGGTGCGATATTGTCGCCGCTGGTGGTCGTTTTGGGGGGGTCGTTGCCGTTTATGGTGTTCGCTTTGTGCGGAATTGGTGCTGGCGTTTTCGCGTTTTATCTGCCGGAAACGCTGAACCAACCTCTCTATGATACGTTATCGGGAATGGAGGCCAAGGAAAATAGTGTATAA 1533 0.5545 MRTASFSDSYDRVADPFRSPLLAAKGSEPAAEKLCIDEMLQRHCGEFGRWQLKHFVLTSLAWALEAFHTMVMIFADRQPEWRCRAGWACEAGAKSVCGLEPGSWEWVGRSTVTEWGLFCGDKYKVGLVQAVFFGGCMIGAGIFGHLSDSFLGRKGSLTVVCALNTVFGTLTALSPNFSSYVILRLLTGCSTGGVGLCAFVLATEPVGPKARGAAGMSTFYFFSSGIALISAIAYIFPTWRKLYIASSLPSLLFLLFILPFISESPRWYLVRGKTNEATKIMSKIATSNGVDVNSLNESQCQTCHLVMTGSLMDMIRSQVTRQRLILAVVINFLCSVVYYGLSLNVVNMDTNLYLTVILNAVAEMPAFMITAMLLDRWGRKPLTIATLWFSGAFCLVGSLVSNVGVWKGVRMACGVLGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAAQMGAILSPLVVVLGGSLPFMVFALCGIGAGVFAFYLPETLNQPLYDTLSGMEAKENSV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01292 510 Pfam Sugar (and other) transporter 122 497 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca04g01292 510 SUPERFAMILY MFS general substrate transporter 118 496 IPR036259 -
Cca04g01292 510 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 36 507 - -
Cca04g01292 510 ProSiteProfiles Major facilitator superfamily (MFS) profile. 54 493 IPR020846 GO:0022857
Cca04g01292 510 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 36 507 - -
Cca04g01292 510 Gene3D MFS general substrate transporter like domains 53 499 IPR036259 -
Cca04g01292 510 ProSitePatterns Sugar transport proteins signature 1. 370 386 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01292 Cca-Chr4 16114296 16118742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01292 11 509 Organic Solute Cotransporters AT3G20660 66.472 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01292 K08202 - gmx:100805613 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01292 04 16114296 16118742 Cca04g01292 04 16114296 16118742 ECH
Cca10g01013 10 12293294 12297833 Cca04g01292 04 16114296 16118742 PCT