Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01006 ATGTCACTTGCACCCTCCACACCTGTAGCTTCGACCCAACTTGCAGTACCTGACATCGCACGACCTTCTGTAGATTTTCCTCCAGGCATTTTATTGGAGGATGTTTTCCTTAAATATGATCCAGAATCATTGGAAATTAGTGACGATGTGAAGCAGCAAGCTCAAATATTAAAAAAAGCGGTTGAAAAGATGTTTCAATCATCAATCAATCAAAGTATCACACAAAAACTAAATTTTATTGGCTTACTCCAATGTTTAGGTATATCCTATCATTTCCAACAAGAAATTAATCATACATTGAAACAAATTTATAACACTTTTACAAAAGAGAATATCATTGGTGAAGTTGGTGATCTTCACTCTCATGCTCTACTCTTCCGCTTGTTAAGGCAAAAAGGATATCAAATTTCATCCGGTATATTTAACAGATTCAAAAATGAGCAAGGAAACTTCAACGAAACACTTACTAGTGATATTCAAGGATTATGTAGCTTGTATGAAGCTTCACATCTAAGAACTCATGGAGATGATATAATGGAAGAAGCATGTGACTTCTCAAGTACTCAACTTAAGTCCTTGGCCAACCAACTTAGTGCATCTCTTGTTGCACAAATCAATCACTGCTTAAGGCAACCTATAAATAAGAGTGTACCTAGATTTGAGGCAAAGTATCATATAAGTATATATGAACAAGATTCTTCCTACAATGAATCTCTGTTAGCCTTTGCAAAAATAGATTTCAATATTCTTCAAAATTTGCATCTAAAAGAAATTTGCAACATTTCCAAGTGGTGGAAAAACTCAAACTTTGAGAAAAAAGTTCCTTATGCTAGATATAGGTTACTAGAGAGCTATCTTTGGTCATTGGCCATGTCGGACAAACCTGAATACAACATTGGAAGAATGTTTGTGGGAAAATTGATTGGTGTAGTGTGTCTTCTAGATGATACTTATGACGCTTATGGCACTGTTCAAGAACTTGAACTTTTCACAGAAGCAATTCAAAGATGGAATATTAAGCCCATAGAATCTCTTCCACATTGCATGCAAGAAGTATTTAATGCAATTGTAGAATTATGTGATGAAATAGAGTCGACGACAACTGAAAGTGGAAAATCAAGCTTTGTGGTGCCACATTTTAAACAAGCTGTTTTTAACCAAGTAAAAGGCTACATGGTTGAAGCAAAATGGTGCCATGAGGGTTACATTCCAACATATGATGAATATAAAATTAATGGAATTTTAACTTCTTGTTTCCCTCTTTTCATAACATCATTTGTTGGCCTCGGGGAATTTGCCACAGAAGATGTGCTCAATTGGATTTCTAGTGATCCAACGATCATTAAAGTTGTATCAGTTATTGGTAGAGTCTTGGATGATATGGCCTCACATAAGTTTGAGCAACAAAGGGTGCATGTTGCCTCAGCAGTTGAATGTTGCATGAAACAATATGGTATTTCACAAGCAGAAGCCTATTGCTTTATTCACAATGATGTTGAGGAATGTTGGAAGATTATAAATGAAGAGTGTATCAAGTTAAATGATATTCCAAAGTCTGTGATTGAGTGTATAGTTAATTTGGCACGCATGTCTGAAGTTTCATATGAAAATCATCAAGATAAATACACAAATAGTGAATTGTTAAAAGATTACATCTATTCACTATTTCTGGATCCCATGCACGTGCCGCAACCAACACCAGCAGGAGAAGATATTTAA 1719 0.3525 MSLAPSTPVASTQLAVPDIARPSVDFPPGILLEDVFLKYDPESLEISDDVKQQAQILKKAVEKMFQSSINQSITQKLNFIGLLQCLGISYHFQQEINHTLKQIYNTFTKENIIGEVGDLHSHALLFRLLRQKGYQISSGIFNRFKNEQGNFNETLTSDIQGLCSLYEASHLRTHGDDIMEEACDFSSTQLKSLANQLSASLVAQINHCLRQPINKSVPRFEAKYHISIYEQDSSYNESLLAFAKIDFNILQNLHLKEICNISKWWKNSNFEKKVPYARYRLLESYLWSLAMSDKPEYNIGRMFVGKLIGVVCLLDDTYDAYGTVQELELFTEAIQRWNIKPIESLPHCMQEVFNAIVELCDEIESTTTESGKSSFVVPHFKQAVFNQVKGYMVEAKWCHEGYIPTYDEYKINGILTSCFPLFITSFVGLGEFATEDVLNWISSDPTIIKVVSVIGRVLDDMASHKFEQQRVHVASAVECCMKQYGISQAEAYCFIHNDVEECWKIINEECIKLNDIPKSVIECIVNLARMSEVSYENHQDKYTNSELLKDYIYSLFLDPMHVPQPTPAGEDI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01006 572 SFLD Isoprenoid Synthase Type I 236 561 - -
Cca10g01006 572 PANTHER OS04G0344100 PROTEIN-RELATED 2 558 - -
Cca10g01006 572 SFLD Terpene Cyclase Like 1 C Terminal Domain 236 561 IPR034741 -
Cca10g01006 572 PANTHER TERPENE SYNTHASE FAMILY, METAL-BINDING DOMAIN PROTEIN 2 558 - -
Cca10g01006 572 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 38 234 IPR008930 -
Cca10g01006 572 Gene3D - 71 235 IPR036965 GO:0010333|GO:0016829
Cca10g01006 572 Gene3D Farnesyl Diphosphate Synthase 36 546 IPR008949 -
Cca10g01006 572 Pfam Terpene synthase family, metal binding domain 240 504 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca10g01006 572 Pfam Terpene synthase, N-terminal domain 35 209 IPR001906 GO:0010333|GO:0016829
Cca10g01006 572 CDD Terpene_cyclase_plant_C1 21 559 IPR044814 GO:0010333|GO:0016102
Cca10g01006 572 SUPERFAMILY Terpenoid synthases 236 561 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01006 Cca-Chr10 12002441 12006600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01006 K15803 - gmx:100781367 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01006 10 12002441 12006600 Cca10g01006 10 12002441 12006600 ECH
Cca10g01006 10 12002441 12006600 Cca04g01289 04 16028411 16043360 PCT