Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00990 ATGGAGGACAAAGAAGACCTCAAAAAGCCTAAGGTCATCAAAATAGACTCTCAAAAATCATGGGAACACCACATCTCTCATGCCACCAATCAAAAGTACCCTGTTGTGGTTCATTTCTCTGCTTTCTGGTGTGTGCCTTCTATAGTCATGAATCCTTTCTTTCAAGAACTGGCCTCCACTTATCAAGATGTTCTGTTTCTGACGTTGGATGTGGATGAGGTTAAGGAAATTGCCTCCAAGATGGAAATAAAAGCCATGCCCACCTTTGTGTTGCTGAGTGGAGGGACTACAGTGGACAAAATTGTGGGTGCAAATCCTGATGAAATAAGGAAAAGGATTGATCATTTTATTCACTCCCACAAATCTATGTGA 372 0.414 MEDKEDLKKPKVIKIDSQKSWEHHISHATNQKYPVVVHFSAFWCVPSIVMNPFFQELASTYQDVLFLTLDVDEVKEIASKMEIKAMPTFVLLSGGTTVDKIVGANPDEIRKRIDHFIHSHKSM 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00990 123 CDD TRX_family 34 114 - -
Cca10g00990 123 Pfam Thioredoxin 16 114 IPR013766 -
Cca10g00990 123 ProSiteProfiles Thioredoxin domain profile. 1 118 IPR013766 -
Cca10g00990 123 Gene3D Glutaredoxin 1 122 - -
Cca10g00990 123 PANTHER THIOREDOXIN 1 121 - -
Cca10g00990 123 PANTHER THIOREDOXIN 1 121 - -
Cca10g00990 123 SUPERFAMILY Thioredoxin-like 8 120 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00990 Cca-Chr10 11640811 11642513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00990 K03671 - gmx:100499858 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00990 10 11640811 11642513 Cca10g00990 10 11640811 11642513 ECH
Cca10g00990 10 11640811 11642513 Cca04g01275 04 15668761 15671369 PCT