Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01275 ATGAAAAGCCAAAAACAGCTCAGAAAGTCCAAGGTTGTGAAAATTGACTCAAGAAAGTCATGGGAGCACCACATCATTGATGCTACCAATAAAGGCTACCCTGTTATGGTTCATTTTTCTGCTTATTGGTGCGTCCCTTCTATAGCTATGAACCCTTTCTTTCAAGAACTGGCCTCCACCTATCAAAATGTTCTCTTTCTGAATGTGGATGTAGATGAGGTTAAGGAAATTTCCTCCAAATTGGAAATTAAAGCCATTCCCACCTTTGTGTTGATGAATGGAGGAGCTCCAGTGAACAAAACTGTGGGTGCAAATCCTGATGAGATAAGGAAAAGAATAGATTGTTTTATTCACCAGACACATTCCCCCAAGTCAAATGATGCATGA 387 0.4005 MKSQKQLRKSKVVKIDSRKSWEHHIIDATNKGYPVMVHFSAYWCVPSIAMNPFFQELASTYQNVLFLNVDVDEVKEISSKLEIKAIPTFVLMNGGAPVNKTVGANPDEIRKRIDCFIHQTHSPKSNDA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01275 128 CDD TRX_family 34 114 - -
Cca04g01275 128 ProSiteProfiles Thioredoxin domain profile. 1 118 IPR013766 -
Cca04g01275 128 SUPERFAMILY Thioredoxin-like 7 116 IPR036249 -
Cca04g01275 128 Pfam Thioredoxin 15 113 IPR013766 -
Cca04g01275 128 PANTHER THIOREDOXIN 1 125 - -
Cca04g01275 128 Gene3D Glutaredoxin 1 123 - -
Cca04g01275 128 PANTHER MONODEHYDROASCORBATE REDUCTASE (NADH)-RELATED 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01275 Cca-Chr4 15668761 15671369 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01275 K03671 - gmx:100306379 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01275 04 15668761 15671369 Cca04g01275 04 15668761 15671369 ECH
Cca10g00990 10 11640811 11642513 Cca04g01275 04 15668761 15671369 PCT