Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00987 ATGCAGCTGCATATATCTCCAAGTTTGAGGCATGTCACTGTGTTTCCAAGCAAAGGGTTCAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGCGTGTCTCTTATCGGATGCTCTTCTATTCACTCTTGTTCTTCACTTTTCTTCTCCGGTTTGTGTTTGTTTTAGCATCAGTGGATGGCATTGATGGAGAAAATAAATGCTCTACCATAGGTTGCCTAGGGAAAAAACTAGGACCAAGGATATTGGGAAGACGGCCTGAATCAGCTGTCCCAGAAGTGATATACCAAACATTAGATGAGCCTCTCGGCAAACTTGAACTTCAGGGAAGGTTTGATATTCCACAAACCTTAGAAGAGTTCATGACTGAAATGAAGAAAGGTGGATATGATGCCAAGACATTTGCCGTTAAACTTAGAGAAATGGTAACCCTTATGGAGCAGAGGACCAGGATGGCCAAAATCCAAGAATATCTATATAGACATGTAGCATCAAGCAGCATACCAAAACAACTTCACTGTCTTTCCTTGAGTTTGGCCAATGAACACAGCAACAATGCCGGGGCACGCCTTCAGCTCCCCTCTGCAGAACTAGTCCCTGCCCTGGTTGACAATTCCTACTTCCATTTCGTCCTCGCCTCAGACAATGTTCTGGCTGCATCCGTGGTTGCTAAATCGCTTGTTCGCAACTGTTTGAGGCCTCAGAAAGTTGTTCTGCATATAATTACAGACAGGAAGACTTATTATCCCATGCAGGCTTGGTTCTCATTGCATTCTTTGTCACCTGCTATAATTGAGGTCAAGGCATTGCACCACTTTGATTGGCTTTCAAAGGGAAAGGTGCCTGTTCTGGAAGCTATGGAGAAAGATCAAAAGGTGAGGTCACAGTTTAGAGGGGGGTCATCAGCTATTGTTGCAAATACCACAGAGAAGCCAAATGTTATTGCTGCAAAACTACAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGTTGTTTCCAAGTCTTAACAAGGTGGTCTTCCTGGATGATGACATCGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGAGATGAATGGAAAAGTCAATGGAGCTGTAGAGACATGTGCTGGAGAAGATAAGTTTGTGATGTCGAAGAGGTTGAAAAGCTATTTGAACTTCTCCCACCCTCTAATATCCAAAATTTTTAACCCCAATGAATGTGCCTGGGCCTATGGCATGAACATCTTTGATTTGGAGGCTTGGAGGAAGACCAATATAAGCAACGTTTACCATTATTGGGTTGAGCAGAATATCAAATCAGACCTGAGTTTGTGGCAGCTAGGGACATTACCTCCTGGGTTGATAGCATTTCATGGTCATGTCCATGTTATTGATCCTTTCTGGCATATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTGCTGATGCTGAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGAAATTGCTTTTCCACAACTAAGGACATTATGGACAAAGTATGTTGACTTCTCAGATAAGTTCATCAAGAGTTGTCATATTAGGGCATCATAG 1602 0.4307 MQLHISPSLRHVTVFPSKGFKEFIKVKVASRRVSYRMLFYSLLFFTFLLRFVFVLASVDGIDGENKCSTIGCLGKKLGPRILGRRPESAVPEVIYQTLDEPLGKLELQGRFDIPQTLEEFMTEMKKGGYDAKTFAVKLREMVTLMEQRTRMAKIQEYLYRHVASSSIPKQLHCLSLSLANEHSNNAGARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVAKSLVRNCLRPQKVVLHIITDRKTYYPMQAWFSLHSLSPAIIEVKALHHFDWLSKGKVPVLEAMEKDQKVRSQFRGGSSAIVANTTEKPNVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCAGEDKFVMSKRLKSYLNFSHPLISKIFNPNECAWAYGMNIFDLEAWRKTNISNVYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLEIAFPQLRTLWTKYVDFSDKFIKSCHIRAS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00987 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Cca10g00987 533 Pfam Glycosyl transferase family 8 206 506 IPR002495 GO:0016757
Cca10g00987 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Cca10g00987 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Cca10g00987 533 CDD GT8_like_1 207 519 - -
Cca10g00987 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 527 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00987 Cca-Chr10 11616743 11620431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00987 1 533 Glycosyltransferase AT5G54690 80.187 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00987 K20867 - gmx:100812550 1011.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00987 10 11616743 11620431 Cca10g00987 10 11616743 11620431 ECH
Cca10g00987 10 11616743 11620431 Cca04g01273 04 15658031 15661734 PCT