Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01273 ATGTTGCTGCAGATATCACCCAGTTTAAGGCATGTCACTGTGCTTCCGGGAAAAGGGTTGAAGGAGTTTATCAAAGTGAAGGTTGCATCGAGGAGGCTTTCTTATCGGATGCTATTTTATTCACTGTTGTTCTTCACATTCCTTCTTAGGTTTGTGTTTGTTTTGACAGCAGTGGATAACATTGATGGAGAAAACAAATGCTCTTCCATAGGTTGCCTGGGAAAAAAATTGAGGCCTAAGATTTTGGGGAGAAGTCTTGAATCAAATGTCCCAGAAGTGATATACGGAATATTAGATCAACCCCTTGGCAAAGATGAATTAGAGGGAAGGTCTGATATTCCTCAGACTTTAGAAGAGTTCATGATCCAAATGAGGGAAGGTGGATATGATGCCAAGACATTTGCAATCAAACTAAGAGAAATGGTAACCTTTATGGAACAAAGGACAAGGGAAGCCAAAATCCAAGAATATTTATATCGTCATGTAGCATCAAGCAGCATACCTAAACAGCTTCACTGCCTTGGCTTGAGGCTGGCCAGTGAACACTCCAACAATGCAGCTGCACGCCTTCAACTTCCATCTGCAGAACTAGTCCCTGCACTTGTTGACAACAACTACTTCCACTTTGTGCTTGCCTCAGACAATGTTCTTGCTGCCTCTGTGGTTGCAAAATCGCTCGTTCGCAACAGTTTGCGGCCTCAGAAGGTTGTTCTGCACATTATTACGGATAGGAAGACTTACTATCCCATGCAGGCTTGGTTTTCCTTGCACCCTTTAACACCTGCCATAATTGAGGTCAAGGCATTGCACCACTTTGATTGGTTTACAAAGGGAAAAGTACCTGTGCTCGAAGCAATGGAAAAGGATCAAAATGTGAGATCACAGTTTAGAGGGGGCTCATCAACTATAGTTGCAAATGCTACTGAGAACCCAAAGGTAATCGCTGCAAAGCTGCAAGCACTTAGTCCCAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAGTTGTTCTCAAGTCTTAGCAAGGTGGTGTTTCTTGATGATGATATTGTGGTACAAAGTGATCTTACACCTCTGTGGGACATTGACATGAATGGAAAAGTCAATGGAGCAGTGGAAACATGTACTGGTGATGATAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCGCACGCTTTAATATCCCAGAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGTATGAACATTTTCGACCTTGATGCATGGAGGAAGACCAATATAAGCTCTACATACCATTACTGGGTTGAGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCTCCTGGATTAATAGCATTCCATGGTCATGTCCATGCTATTGATCCTTTCTGGCACATGTTGGGATTGGGATATCAGGAAACTACAAGTTTGGATGAAGCTAAGAGTGCTGGTGTCATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCCCATCTAAGGCCATTGTGGACTAAGTACATTGATTTTTCTGATTACTTCATAAAGAGCTGTCACATTAGAAAATTGTAA 1602 0.4176 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLFYSLLFFTFLLRFVFVLTAVDNIDGENKCSSIGCLGKKLRPKILGRSLESNVPEVIYGILDQPLGKDELEGRSDIPQTLEEFMIQMREGGYDAKTFAIKLREMVTFMEQRTREAKIQEYLYRHVASSSIPKQLHCLGLRLASEHSNNAAARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVAKSLVRNSLRPQKVVLHIITDRKTYYPMQAWFSLHPLTPAIIEVKALHHFDWFTKGKVPVLEAMEKDQNVRSQFRGGSSTIVANATENPKVIAAKLQALSPKYNSVMNHIRIHLPELFSSLSKVVFLDDDIVVQSDLTPLWDIDMNGKVNGAVETCTGDDKFVMSKRLKSYLNFSHALISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHAIDPFWHMLGLGYQETTSLDEAKSAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIRKL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01273 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Cca04g01273 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Cca04g01273 533 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Cca04g01273 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Cca04g01273 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 525 IPR029044 -
Cca04g01273 533 CDD GT8_like_1 207 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01273 Cca-Chr4 15658031 15661734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01273 1 531 Glycosyltransferase AT5G54690 79.550 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01273 K20867 - gmx:100777811 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01273 04 15658031 15661734 Cca04g01273 04 15658031 15661734 ECH
Cca10g00987 10 11616743 11620431 Cca04g01273 04 15658031 15661734 PCT