Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00986 ATGATTGAGGCTGAATTTGAGGAATCGCTGATTATTGTGTTGTGGGTTGGTGCTATTTTGGTGTGTTTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGGTTCTTCACCAGGGTAATAATGGTGGTGGCAGAACCAACGGTTTCATTCCTAGTTCTTTTCGGGCTCTCTCTAGCTACCTTAGAATTGTTTCATCTGGTGCTTCCACCGTTGCACGCTCTGCTGCATCCGTTGCTTCATCGATTGTGGAGAGGGATGATGATCCTGATCATGATCAGGTTATCTGGGCTGGGTTTGACAAGTTAGAGGGTGAGGGTGAAGTTATTCAGCAAGTACTTCTTCTAGGCTATCGATCTGGCTTCCAGGTTTGGCATGTGGATGAATCAAATAATGTCCGAGACATAGTGTCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCTAATCCAATCGCATCAAAGAAATCAGAAGACAAGTATGCAAACAGCCGCCAGCTGTTGGTAGTTTGTACGGATGGGTTCTTTGCTGGAGGTAGCACTGTTCAGGATGGGTTGACCACTCCTTACAATGGAAGCGCTTCAAACTCGCACGACCAAATGAATGGAAACTATTTGCCAACTACTGTTCAGTTTTATTCTATGAAATCTCAATCATATGTTCATGTTCTGAAGTTTAGAACAGTTGTTTATTCTGTGAGGTGTAGTCCTCGAATAGTTGCTGTTGCTCAATCCGCTCAAATCCACTGTTTTGATGCTACCACATTAGAAAGGGAATATACCTTACTTACCAATCCTATAGTCATGAGTTGCCCTGGTTCTGGAGGCATAGGTTATGGACCACTTGCGGTTGGTCCAAGATGGCTGGCCTATAGTGGATGTCCTGTTGCAATTTCCAATTCAGGACATGTTACTCCACAGCATCTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCTAATGGGAGCTTAATTGCACATTATGCCAAAGAGTCTAGCAAGCATCTTGCTTCTGGGATTGTGACCCTTGGAGATATGGGGTATAAGAAACTTTCAAGATACTGCTCTGATAACAATGGTTCATTACAATCAGCAAATGCAGGCTCTAAGGGCAATGGAACCATTAATGGCCATTCAACAGATGCAGATAACATTGGAATGgttattgttaaagatattgtCTCAAAAAACGTTATTGCCCAATTCCGGGCCCACAAGAGTCCTATTTCAGCATTATGCTTTGATCCTAGTGGCACCATATTAGTGACAGCTTCCATTCAGGGTCATAATATAAATGTTTTTAAGATTATGCCTGCACGTGAGAATTTGTCAGCTTCTGATACTGGGTCTTCTTATATTCAATTGTACAGGCTGCAACGTGGCTTTACAAATGCAGTTATACAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTATTTGCCATAAATCCTCAAGGAGGACACGTAAATATTCAGTCCTTTGATGATAATTTTATAGCAAAAAATGGTGGATTAGGCACTAACGCTAATCACGCACTTGGCCAGTCTCATAGTTCAGCCATGCAAATGCCTAAACAGCAGAGCCTGTTCGTGGCTGGTCCTCCCATCACACTTTCTGTTGTAAGCCGAATTAGGAATGGAGCTAATGGCTGGAGAGGCACCGTAAGTGGTGCTGCTGCAGCTGCTACTGGCAGGAAAACTGCCCTTTCTGGTGCTGTTGCTTCATCTTTCCGTAACTATAAACGTACTGAAGGGAATTATTCGAAGGCTAAGTATAACTTGTTGGTCTTTTCGCCCACTGGTTCCATGATACAATATGCTCTGCGGGCGTTAACCAGTCAAGATTCTGCTGTTGTTTCTGGAATGAGCCCTGCTTATGAATCCATTCCGCAGGATGATGCAAGACTAGTGGTTGAGGCTATCCATAAATGGAATATATGCCAGAGTCATAGTCGGCGTGAGCGGGATGATAATGTGGACATATATGGTGAGAATGGAATTTCAGACACTAAGAAAATATATCCAGAGGATGTGGGGGAGGAGAATGGCATTGGACCGAAAATCAAGAATGCAGTCATGAAAGTGAGTCCCTCTCTTGAGGAGCAGCATCATTTGTATATCTCAGAAGCTGAATTGCAAATGCATCAAGTTCAGACTCCATTGTGGGCGAAGCCAGAGATATATTTTCATGCAATGTTACAAGAGTCTACCTTGAAGGATGATGAAGCTTCTTCAGGAGGTGAATTTGAGATTGAAAGGATTCCAACTTGCATGATTGAAGCTAGACCAAAAAGCTTGGTTCCCATTTTTGACTATATGCAGACCACAAAATTACAGCAAACAAGGATTCCTGCTATGGATGGCAAGGCAAGTGAACAACTGATGCATCGCAGTTTCCGGCCTGCCGAAAACAGCAAGATTTCACCCAGGAATATTTTGGGATCTCCTGAGTGTGTGACTAATGCTGATGATGCTGCCACTGAATTTAAAAGTGGGATTGAAGGAACTGAGTGGGATAATCATGTGGTAACATCTGAAACCATGGCCTTTGTAAATAACAATGAAACCCTTTATCCAAATATTCAGCATGAGATTGTAAATAATAGAAGGGAGCACTTAAACACCGGGGCTCATCTCATGTTTGTAAATAGTGACAGAAAGCCTGAAAATGAAGAATCATTTTGA 2724 0.4251 MIEAEFEESLIIVLWVGAILVCLVMGMRNDAQKQQVLHQGNNGGGRTNGFIPSSFRALSSYLRIVSSGASTVARSAASVASSIVERDDDPDHDQVIWAGFDKLEGEGEVIQQVLLLGYRSGFQVWHVDESNNVRDIVSRHDGPVSFMQMVPNPIASKKSEDKYANSRQLLVVCTDGFFAGGSTVQDGLTTPYNGSASNSHDQMNGNYLPTTVQFYSMKSQSYVHVLKFRTVVYSVRCSPRIVAVAQSAQIHCFDATTLEREYTLLTNPIVMSCPGSGGIGYGPLAVGPRWLAYSGCPVAISNSGHVTPQHLTPSASFPGFSSNGSLIAHYAKESSKHLASGIVTLGDMGYKKLSRYCSDNNGSLQSANAGSKGNGTINGHSTDADNIGMVIVKDIVSKNVIAQFRAHKSPISALCFDPSGTILVTASIQGHNINVFKIMPARENLSASDTGSSYIQLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNIQSFDDNFIAKNGGLGTNANHALGQSHSSAMQMPKQQSLFVAGPPITLSVVSRIRNGANGWRGTVSGAAAAATGRKTALSGAVASSFRNYKRTEGNYSKAKYNLLVFSPTGSMIQYALRALTSQDSAVVSGMSPAYESIPQDDARLVVEAIHKWNICQSHSRRERDDNVDIYGENGISDTKKIYPEDVGEENGIGPKIKNAVMKVSPSLEEQHHLYISEAELQMHQVQTPLWAKPEIYFHAMLQESTLKDDEASSGGEFEIERIPTCMIEARPKSLVPIFDYMQTTKLQQTRIPAMDGKASEQLMHRSFRPAENSKISPRNILGSPECVTNADDAATEFKSGIEGTEWDNHVVTSETMAFVNNNETLYPNIQHEIVNNRREHLNTGAHLMFVNSDRKPENEESF 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00986 907 Pfam Breast carcinoma amplified sequence 3 546 781 IPR022175 -
Cca10g00986 907 SUPERFAMILY WD40 repeat-like 112 496 IPR036322 GO:0005515
Cca10g00986 907 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 27 883 IPR045142 GO:0006914
Cca10g00986 907 SMART WD40_4 397 437 IPR001680 GO:0005515
Cca10g00986 907 SMART WD40_4 219 254 IPR001680 GO:0005515
Cca10g00986 907 SMART WD40_4 453 494 IPR001680 GO:0005515
Cca10g00986 907 Gene3D - 111 513 IPR015943 GO:0005515
Cca10g00986 907 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 27 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00986 Cca-Chr10 11589460 11596664 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00986 - - gmx:100784596 1540.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00986 10 11589460 11596664 Cca10g00986 10 11589460 11596664 ECH
Cca10g00986 10 11589460 11596664 Cca04g01272 04 15628128 15634301 PCT