Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01272 ATGATTGAATTTAAGGGTGAATTTGGAGAATCATTGGTGACCCTTTTCTTGTTGTGGTTGTGGATAGCTGTTATTTTCATCTCTTTAGTTTTTGGGATGAGTAGGAATGGTGGTCAGAAACAAGGACGCCTTCTTCGTGGAGGTGTTGCAGCCGCAGATAGTAGTGGCAGAGCCAACAGCAATGGCTTTATTCCCAGCTCCTTTCGTACTCTCTCTGGTTACATGAAGACTGTTTCATCTGGTGCTTCTATTGTTGCTCGGTCTGCAGCCGCCTCTTTTGCATCGTCCATTTTGGATAAGGATGGTGGTGCTGATCCTAATCAGGTTATTTGGGCTGGGTTTGACTCGATAGAGGGCCAGGGAAAAGTCATTCGAAAAGTACTTCTTCTAGGCTATTCATCTGGCTTCCATGTTTGGGATGTTGATGATTCAAATAATGTCTGTGATCTAGCTTCCAGACATGATGGTCCTGTTTCTTTTATGCAAATGGTTCCAAGTCCAATTGTATCAAAGACACCAGAGGACAAGTTTGCAAACAGGCGTCCTTTGTTGGTAGTTTGTACAGACAGTTTCTTGGCTGATGGAGGCAAAATACAAGATGGGTTGGTTGCCACTTGCAATGGGGGTGCATTAAACTGCCATGACCAAGTAAAGGGAAACTGTCTGCCAACTACTGTTCAATTTTATTCTATGAGGTCTCAATCGTATGCTCATGTACTAAAGTTTAGATCAGTTGTTTATTCTATAAGATGTAGTTCTCGAATAGTTGCTGTTTCTCAAGCCACTCAGATACACTGTTTTTCTGCAACAACTTTAGAGAGAGAGTATACTTTACTCACCAATCCTATAGTCATGGGTGGTATTGGTTCTGGAGGCATTGGCTTTGGACCACTTGCAGTGGGTCCTAGATGGCTGGCCTACAGTGGAAGCCCAGCTGCAACAGCCCCTTCTGGGCGTGTCAGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTTGTTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCTAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACCCTTGGTGATATGGGGTATAAGAAACTTTCCAGATACTGCTCAGAACTTCGCCCAGATAGCACTGGTTCTATACAATCTGCAAATTCTAGCCCAAAAGGAAATCGAATGATTAGCCATTCAACAGATGTGGATAACATTGGGATGGTCATTGTAAGAGATATAGTCAGTAAAAATGTCATTGCCCAATTCCGGGCCCACAAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAGTGGTACCATATTAGTGACGGCTTCTGTTCAGGGGCATAACATTAATGTTTTTAAGATAATGCCTGGATATGAGAGAGTGTCAACATCTGATGCTGGCCCATCTTATGTTCATCTTTACAGGCTGCAACGTGGTTTTACAAATGCAGTTATTCAAGATATCAGTTTTAGTGTTGATAGCAAGTGGATTATGATTAGTTCCTCAAGGGGAACTAGCCATCTATTCGCTATAAATCTTCAAGGAGGGCCTGTAAATATTTTGTCATATGACAATAGCTTAACTGAAAATAATGATGGATTGGGTGTTATGTCTAATCAAGCGGTTCGTTGGCCTCATAGTTCATCTTTAAAAATTTGTAAACCGCAGAGCCTTTGTGCTGTGGGTCCTCCAATAACACTTTCTGTTGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAAGCACAGTAACTGGTGCTGCTGCAGCTGCAACAAGTAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTTTGTAACTTTGAAGGCAGCAGTAGCTTTTATGTTAATGGGAACTATTCCAAGGAAAAGTATCATCTGTTGGTCTTTTCACCTACTGGTTCTATGATACAATATGCTCTGCAGACAATTAGCAGTCAAGATTCAGTTGTTGTTTCTGGATTAACACCTGCATATGAATCCGTCCCACTGACTGATGCAAGAGTAGTAGTTGAGCCGATCCAGAAATGGAGTATAAGTCGGAGACATAGTTGGAGAGAGGGAGAAGATAATATTGATATATATGGTGAGAAGGAAGCTTCAGACAGCAATAATGTATATTCAAAGGAAGTGAACGAGGATAGTATCATTGGCCCAAAAATCAATGACATATCCCAGAAATTGAATTCCTATTCTGAGAAAGAATGTCGCTTGTATATTTCAGAAGCTGAACTACAAATGCATGAAGCTAAGATTCCATTGTGGTCAAAGACTGAGATATATTTTCACTCGATGGGTAAAGAGGCTACTTTGATGGCGGATGAACAAGTCTCTTCCAGAGGGGAATTTGAGATCGAAAAGATTCCAACTCATGTGATAGAAGTTAGGTCAAAAGACTTGGTTCCAATTTTTGACTATATGCAAACCCCAAAATTTCAACCATTAAGGACTCTTGCTGTGGATAACAGAAATGAACAACTTTTGCATCAAAGTTATAAGTTGTTTGAAAAGGGAAGAGTTTCACCCAGGAGTTTTTTGGAATCTCCTGATTGTATTATGACTAATTCTAGTGGAACTATTGCTGAAACTGGGATTCAAGGAAATGAGTGGAACGATCATTTGATTCCGGTAGAAACAAAGGGATTTGTAAATAAAGATAACACCCTTAAACCAAATACTAGGCCAAAGATTGTAAATAATAGAATTGAGTACTTCAACATGGATGATCGACATATGTTTGTATACGGTGACAGTAGAGGCCTGAATCTGGAGAATGACTGTGAAGAAAAAAGAGATGAATTTGATTGA 2814 0.4069 MIEFKGEFGESLVTLFLLWLWIAVIFISLVFGMSRNGGQKQGRLLRGGVAAADSSGRANSNGFIPSSFRTLSGYMKTVSSGASIVARSAAASFASSILDKDGGADPNQVIWAGFDSIEGQGKVIRKVLLLGYSSGFHVWDVDDSNNVCDLASRHDGPVSFMQMVPSPIVSKTPEDKFANRRPLLVVCTDSFLADGGKIQDGLVATCNGGALNCHDQVKGNCLPTTVQFYSMRSQSYAHVLKFRSVVYSIRCSSRIVAVSQATQIHCFSATTLEREYTLLTNPIVMGGIGSGGIGFGPLAVGPRWLAYSGSPAATAPSGRVSPQHLTPSASFPCFSSNGSLVAHYAKESSKHLAAGIVTLGDMGYKKLSRYCSELRPDSTGSIQSANSSPKGNRMISHSTDVDNIGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPGYERVSTSDAGPSYVHLYRLQRGFTNAVIQDISFSVDSKWIMISSSRGTSHLFAINLQGGPVNILSYDNSLTENNDGLGVMSNQAVRWPHSSSLKICKPQSLCAVGPPITLSVVSRIRNGSNGWRSTVTGAAAAATSRMSSLSGAIASSFCNFEGSSSFYVNGNYSKEKYHLLVFSPTGSMIQYALQTISSQDSVVVSGLTPAYESVPLTDARVVVEPIQKWSISRRHSWREGEDNIDIYGEKEASDSNNVYSKEVNEDSIIGPKINDISQKLNSYSEKECRLYISEAELQMHEAKIPLWSKTEIYFHSMGKEATLMADEQVSSRGEFEIEKIPTHVIEVRSKDLVPIFDYMQTPKFQPLRTLAVDNRNEQLLHQSYKLFEKGRVSPRSFLESPDCIMTNSSGTIAETGIQGNEWNDHLIPVETKGFVNKDNTLKPNTRPKIVNNRIEYFNMDDRHMFVYGDSRGLNLENDCEEKRDEFD 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01272 937 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 57 902 IPR045142 GO:0006914
Cca04g01272 937 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 57 902 - -
Cca04g01272 937 Gene3D - 122 511 IPR015943 GO:0005515
Cca04g01272 937 Pfam Breast carcinoma amplified sequence 3 563 804 IPR022175 -
Cca04g01272 937 SUPERFAMILY DPP6 N-terminal domain-like 131 639 - -
Cca04g01272 937 SMART WD40_4 470 511 IPR001680 GO:0005515
Cca04g01272 937 SMART WD40_4 414 454 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01272 Cca-Chr4 15628128 15634301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01272 - - gmx:100778343 1355.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01272 04 15628128 15634301 Cca04g01272 04 15628128 15634301 ECH
Cca10g00986 10 11589460 11596664 Cca04g01272 04 15628128 15634301 PCT