Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00944 ATGTCTTCAAGTGGCAAGGATTTGGGAGAAGGATCAAGCTCTCCAACAGATCATTACCAACAGAGTCCAGGGACACTTAGCCGCTATGAGTCTCAAAAGAGAAGAGATTGGAACACTTTTGGTCAGTACTTGAAGAACCAAAGGCCTCCAGTTCCACTTTCTCAGTGCAACTGTAACCATGTGTTGGATTTCCTTAGGTATCTTGACCAGTTTGGGAAGACCAAGGTTCACCTTCAAGGGTGCATGTTCTATGGCCAGCCAGAACCTCCAGCACCCTGCACTTGCCCCCTTAGACAGGCTTGGGGAAGCCTTGATGCTCTCATAGGGAGGCTCAGGGCTGCTTATGAGGAAAATGGTGGGTCCCCTGAGACCAACCCTTTTGCAAGTGGCTCAATCCGTGTGTACCTTAAAGAGGTTAGGGAGTGCCAAGCCAAGGCTAGAGGTATCCCTTACAAGAAGAAAAAGAAGGGCACAAATCAAGGCAAGGGAAATGATGAATCATCCTCCACCATGCACTTCTCTTGA 525 0.4857 MSSSGKDLGEGSSSPTDHYQQSPGTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGSIRVYLKEVRECQAKARGIPYKKKKKGTNQGKGNDESSSTMHFS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00944 174 Pfam ALOG domain 20 141 IPR006936 -
Cca10g00944 174 MobiDBLite consensus disorder prediction 1 31 - -
Cca10g00944 174 PANTHER PROTEIN G1-LIKE2 2 174 IPR040222 -
Cca10g00944 174 MobiDBLite consensus disorder prediction 147 174 - -
Cca10g00944 174 PANTHER DUF640 FAMILY PROTEIN 2 174 - -
Cca10g00944 174 MobiDBLite consensus disorder prediction 1 28 - -
Cca10g00944 174 ProSiteProfiles ALOG domain profile. 28 155 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00944 Cca-Chr10 10922113 10926754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00944 - - gmx:100802937 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00944 10 10922113 10926754 Cca04g01502 04 21397804 21400264 ECH
Cca10g00944 10 10922113 10926754 Cca10g00944 10 10922113 10926754 ECH
Cca10g00944 10 10922113 10926754 Cca09g01904 09 43908096 43913309 ECH
Cca04g01502 04 21397804 21400264 Cca10g00944 10 10922113 10926754 PCT