Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01904 ATGTCCACCCAAATTCAAAATGGTTCTTCTCACTCTCACGCCTCCTCATCATCTTCACAACACCCTCCTTCCAATCAACAACCACTGAGCCGGTATGAATCACAAAAGAAACGAGACTGGAATACCTTTGGACAGTACCTGAAGAATCAGAGTCCTCCAGTTCCTCTCTCTCAGTGCAACTTCAACCATGTGTTGGATTTCCTTCGGTACCTTGATCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTCTTTGGGCAACCCACCCCTCCGGCGCCATGTGCCTGCCCTCTCAGGCAGGCATGGGGTAGCCTGGATGCCCTCATCGGGCGGCTTCGCGCCGCCTATGAAGAGCATGGTGGGTCGCCGGAGACTAATCCCTTTGGAGGCGGAGCCATTCGGGTGTACCTGCGTGAGGTGAAGGAGTGCCAGGCAAAGGCTAGAGGGATCCCATATaagaagaagaaaaagaagaggaaCCCAATTAAGGGGACTCAAAGTGCAAAAGATATCGAGCACCAAGTTTCTTGA 537 0.5028 MSTQIQNGSSHSHASSSSSQHPPSNQQPLSRYESQKKRDWNTFGQYLKNQSPPVPLSQCNFNHVLDFLRYLDQFGKTKVHLHGCIFFGQPTPPAPCACPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGGGAIRVYLREVKECQAKARGIPYKKKKKKRNPIKGTQSAKDIEHQVS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01904 178 MobiDBLite consensus disorder prediction 150 178 - -
Cca09g01904 178 MobiDBLite consensus disorder prediction 1 35 - -
Cca09g01904 178 MobiDBLite consensus disorder prediction 1 31 - -
Cca09g01904 178 Pfam ALOG domain 24 144 IPR006936 -
Cca09g01904 178 PANTHER PROTEIN G1-LIKE2 4 171 IPR040222 -
Cca09g01904 178 ProSiteProfiles ALOG domain profile. 31 158 IPR006936 -
Cca09g01904 178 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 4 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01904 Cca-Chr9 43908096 43913309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01904 - - gmx:100810655 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01904 09 43908096 43913309 Cca09g01904 09 43908096 43913309 ECH
Cca04g01502 04 21397804 21400264 Cca09g01904 09 43908096 43913309 ECH
Cca04g01210 04 14215533 14218850 Cca09g01904 09 43908096 43913309 ECH
Cca10g00944 10 10922113 10926754 Cca09g01904 09 43908096 43913309 ECH