Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00927 ATGGCTTCGGGGTCAATAGTTGGAGATGATGGAGCCAAAGAGAAGCAGAGATACACGGAGAGCAAGGTTTACACTAGGAAAGCGTTTAAAGGTCCTAAGAACAAAGGTAACGCTGTGAACAACGTCAACGCCGTTCCTCCTCCTCCTCCCTCCGCTGCACCTACTACCAACAGTTCTGCCACGGTCACCGCCGTTGATTACAACAATAAGGACAACAGCACTGTCGATAACGGTAATGATAGGGTTAAGGATAATTGCAATAACGTCTCGGCTCAGCCGGCGGTGGTGCCGGAAGATGGGAATTCAGCTCGGCTGCATGTGAATTCGAGGTTGGACGCGGTTTCGGATGACTCCTCCAGCCTGAACCGTCTACAGGATGAGCCTTTGAGTCATCATGTTCGACAGGACAGTGTTGCCGGCTTGCGAGAGCAGTCGCCGGTGCCGGAGAATTGTGTTAGGATCAGTTTGGCTTCGCGGTCTAAGCAGGAGAAGCGGGAGCTGAGGAGGAAGCTTGAGAGTGAGCTTGATAGGATTAGAAGTTTGGTGAATAGGATTGAAGAGAAGCAGGGGCTGCTTGGTGGTGGGTATGGTAATTCAAATATGATGTTGGATCATGGGGTTGGTAATGGGGTTGGAGCTAAGCAGCGTGCTCGCTCGGAAGTGGCATCTGCTGTTGTTTCACGAGAGCCTACCCGGCCGTTGCATCAGTTGAGTGTGTCAGTGTTGGAGAATAGTCAAGGGGTTGGTGAAATTGTGGAGAAGGAGAAGAGAACACCCAAGGCGAACCAGTTCTATCGCAATTCAGAGTTCTTGCTTGGGAAAGATAAGTTTCCACCTGCAGAGAGTAACAAGAAGTCTAAATTGAATGGGAAGAAGCATGGCATGAGTGAGATGGGACATGGACATGGAATGGGATCCAAGCTCTTAAAGAGTTGTAGCTCATTGCTTGAGAAGTTGATGAAACACAAGCATGGTTGGGTGTTTAATTCTCCGGTTGACGTTGAGGGTCTTGGTTTGCACGATTATTTTAGTATCATCACACATCCAATGGACTTGGGTACTGTTAAGTCCAGGCTGAACAAGAATTGGTACAAATCACCCAAGGAGTTTGCTGAGGACGTGAGACTCACATTTCGCAATGCCATGACTTATAATCCCAAAGGGCAAGACGTTCATGTAATGGCAGAGCAGCTATCAAATGTGTTTGAGGAAAGATGGGCTATAATAGAGTCAAATTACAACAGCAATATGAGATACGGCCTAGATTATGGTGCAGCTATCCCTACACCTTCGCCTCTGTCTAGAAAGGGTCCTTCATTTCGGCCCCCGCCAATTGATATGAGACGGATTTTGGATAGGTCAGAATCAATGACACAACCTCCAAGAATCATGAGCATCACTCCTTCTTCTCGAACCCCTGCTCCCAAAAAGCCCAAGGCAAAAGATCCTCATAAAAGAGACATGACATATGATGAGAAGCAGAAACTTAGCACAAATCTTCAGAGTCTACCTTCTGAAAAGCTAGATGCAATTGTACAGATCATTAAAAAGAGAAATTCAGCACTTTCCCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATACTGAGACTCTATGGGAGCTTGATAGATTTGTGACCAACTATAAGAAAAGTTTGAGCAAAAACAAGAGGAAGGCTGAACTTGCTATTCAAGCTAGAGAACGAGCTGAGCAGAATGCCCAGCAGAAGGTAAAGTTTTCAGTTTTAACTTCCAACAGCTGGTCAGATGAAAGGAACATTCCCCCATCCTCACCTGTGCAAGGGCAAATTCAAGGGGATAATGGGAGTAAGACAAGTAGTTCAAGCAGCTCAAGCAGCGATTCAGGCTCTTCATCAAGTGATTCTGATAGTGATAGTTCCTCAGCATCTGGGTCTGATGCAGAGGAAGCATTCTCGAGGCCACATGTGATCCTACAGATGCAGTATGGGATCACTTTCTTTCATCTGTTGGAATTGTTGCACCACTGCTGTATGGCCTTATTTGTGATAACACGAACTCTTGTAAAATATTTGGTAGAATGTGATGATAGATTCGGGATTCTTGCTGTTATACAAAGATAG 2109 0.458 MASGSIVGDDGAKEKQRYTESKVYTRKAFKGPKNKGNAVNNVNAVPPPPPSAAPTTNSSATVTAVDYNNKDNSTVDNGNDRVKDNCNNVSAQPAVVPEDGNSARLHVNSRLDAVSDDSSSLNRLQDEPLSHHVRQDSVAGLREQSPVPENCVRISLASRSKQEKRELRRKLESELDRIRSLVNRIEEKQGLLGGGYGNSNMMLDHGVGNGVGAKQRARSEVASAVVSREPTRPLHQLSVSVLENSQGVGEIVEKEKRTPKANQFYRNSEFLLGKDKFPPAESNKKSKLNGKKHGMSEMGHGHGMGSKLLKSCSSLLEKLMKHKHGWVFNSPVDVEGLGLHDYFSIITHPMDLGTVKSRLNKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEQLSNVFEERWAIIESNYNSNMRYGLDYGAAIPTPSPLSRKGPSFRPPPIDMRRILDRSESMTQPPRIMSITPSSRTPAPKKPKAKDPHKRDMTYDEKQKLSTNLQSLPSEKLDAIVQIIKKRNSALSQHDDEIEVDIDSVDTETLWELDRFVTNYKKSLSKNKRKAELAIQARERAEQNAQQKVKFSVLTSNSWSDERNIPPSSPVQGQIQGDNGSKTSSSSSSSSDSGSSSSDSDSDSSSASGSDAEEAFSRPHVILQMQYGITFFHLLELLHHCCMALFVITRTLVKYLVECDDRFGILAVIQR 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00927 702 SUPERFAMILY Bromodomain 303 414 IPR036427 GO:0005515
Cca10g00927 702 MobiDBLite consensus disorder prediction 452 496 - -
Cca10g00927 702 SMART bromo_6 301 411 IPR001487 GO:0005515
Cca10g00927 702 Gene3D - 481 562 IPR038336 -
Cca10g00927 702 MobiDBLite consensus disorder prediction 10 27 - -
Cca10g00927 702 MobiDBLite consensus disorder prediction 276 303 - -
Cca10g00927 702 Coils Coil 555 579 - -
Cca10g00927 702 MobiDBLite consensus disorder prediction 458 472 - -
Cca10g00927 702 Coils Coil 157 188 - -
Cca10g00927 702 Pfam Bromodomain extra-terminal - transcription regulation 488 549 IPR027353 -
Cca10g00927 702 PANTHER TRANSCRIPTION FACTOR GTE4 1 643 - -
Cca10g00927 702 MobiDBLite consensus disorder prediction 278 298 - -
Cca10g00927 702 MobiDBLite consensus disorder prediction 475 493 - -
Cca10g00927 702 Gene3D - 288 419 IPR036427 GO:0005515
Cca10g00927 702 PRINTS Bromodomain signature 339 355 IPR001487 GO:0005515
Cca10g00927 702 PRINTS Bromodomain signature 355 373 IPR001487 GO:0005515
Cca10g00927 702 PRINTS Bromodomain signature 323 336 IPR001487 GO:0005515
Cca10g00927 702 PRINTS Bromodomain signature 373 392 IPR001487 GO:0005515
Cca10g00927 702 PANTHER OSJNBA0053K19.4 PROTEIN 1 643 - -
Cca10g00927 702 CDD Bromo_plant1 308 406 IPR037377 -
Cca10g00927 702 ProSiteProfiles Bromodomain profile. 320 392 IPR001487 GO:0005515
Cca10g00927 702 ProSiteProfiles NET domain profile. 478 559 IPR027353 -
Cca10g00927 702 MobiDBLite consensus disorder prediction 588 642 - -
Cca10g00927 702 Pfam Bromodomain 312 396 IPR001487 GO:0005515
Cca10g00927 702 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00927 Cca-Chr10 10746208 10751307 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00927 - - gmx:100781720 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00927 10 10746208 10751307 Cca10g00927 10 10746208 10751307 ECH
Cca10g00927 10 10746208 10751307 Cca04g01196 04 13856790 13863742 PCT