Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00878 ATGGCCGCAGCTTTGGACACAGAATTCCCCATCTTTCTCGTCACTGGCCCCAACAGGATGGAGATGGACCAAAACGGCGACGTATTGTTCAGTTTTTCCGACACCGTTTTTGGGTTTTGGGAGGATCTCGAGGCCCCACCGGAAAATTCATCAGTCTCCGATGACCCTTTTCaagacgacgatggtgatcgagaagaagatgaagatgaagCTCTTTGCTCTGTGGAAAACAACAAAGTTTTCTGGGAAGAACAATACCACCTTCTCCGGGCAACTTTATACAGGACTAGTTCAATCGAGGCAAGAGTTAGGAAAGCTACAAAGGAGGGTCTAAGAGAATTGAATATGTCGGAGAAGCAGTGCATTTGCCGGCGAACGGTGGATGTTAAGAGTTGCCGGAATTGCTTGAGGAGGGAAATTTGTGATCGCTTGTTGAACCTTGGTTACAATTGTGCCCTATGCACATCTAAATGGAGGACTTCATCGGAAATCAAAATATCGGGGGAGCACACTTATCTGGAAGTAATGGATAACTCAAACACTAAAAAAGGAGAAGTAAAAGTGGTAATTGAACTGAATTTTCGAGGCGAATTTGAGATGGCACGAGCCAGTGAAGAATACAACAAATTAATTAGCCAGTTACCCGAAGTATATGTTGGAAAAATAGAGAGGTTACGAGTTATAATTAATATTATGTGTTCAGCTGCACAAAAATGCATGAAGGAAAAGAAAATGCACATAGGACCTTGGAGGAAAAAGAGGTACATGCAATCTAAGTGGCTTGGCATGACAAATAATAATAGGTCCAAAATGACACCACTTCCTATGGTTTACTCTGAACAACCACGAAATTCTAGGGCTTCAATGCTCACCTGTGATTTTTACTAG 888 0.4065 MAAALDTEFPIFLVTGPNRMEMDQNGDVLFSFSDTVFGFWEDLEAPPENSSVSDDPFQDDDGDREEDEDEALCSVENNKVFWEEQYHLLRATLYRTSSIEARVRKATKEGLRELNMSEKQCICRRTVDVKSCRNCLRREICDRLLNLGYNCALCTSKWRTSSEIKISGEHTYLEVMDNSNTKKGEVKVVIELNFRGEFEMARASEEYNKLISQLPEVYVGKIERLRVIINIMCSAAQKCMKEKKMHIGPWRKKRYMQSKWLGMTNNNRSKMTPLPMVYSEQPRNSRASMLTCDFY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00878 295 PANTHER OS03G0796600 PROTEIN 27 294 IPR006502 -
Cca10g00878 295 PANTHER DUF506 FAMILY PROTEIN 27 294 - -
Cca10g00878 295 MobiDBLite consensus disorder prediction 45 68 - -
Cca10g00878 295 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 137 265 IPR006502 -
Cca10g00878 295 MobiDBLite consensus disorder prediction 54 68 - -
Cca10g00878 295 Pfam PDDEXK-like family of unknown function 34 264 IPR006502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00878 Cca-Chr10 10048172 10050360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00878 - - aip:107610489 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00878 10 10048172 10050360 Cca10g00878 10 10048172 10050360 ECH
Cca10g00878 10 10048172 10050360 Cca04g01133 04 12953957 12955469 PCT