Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01133 ATGGACAAAGAATTCTTCACTGTCCCAGTTACTAGCCAGAGCTCCGACGAGGTCACTTTTGCTGATACAGTTTTTGGGTTTTGGGATTCATCCGACTCCATCAGcaaccacaacgacaacgatgatgataatgacaatgatgataatatttttattgagaaaaataataaAACTTTTTGGGAGGAACAAGATCAACTTCTTAAGGGAATTTTGTGCAGGACAAGTTCACGTGAGACAAAAGTTCGGGAAGCAACGAAGGAGGTTGTAGGAGAATTGAAGGTATCGGAGATGGTGTGTATTTGCCAACGGCAAGTGGTGGCTAAGAGTTGCAGGAATTGTTTTCTGAGAGAAATATGTGATCGATTGTTGAACCTTGGCTACAATTGTGCCATTTGTAAATCCAAATGGAGGAGTTCACCCCAAATCCCTTCAGGGGAACATACTTACCTAGAAGTGACAGATAATTCATCAAACACCAAAAGAGGGGCAGTAAAAGTGGTGATTGAATTGAGCTTCAGAGCTGAATTCGAGATGGCACGTGCCAATGAAGAATACAACCAATTAGTTAAGCGATTACCCGAAGTGTTTGTTGGAAAATCAGAGAGGTTAAGAGCATTAGTTAAGATTATGTGCTCAGCTGCAAAAACATGCATGAAGGAGAACAAAATGCACATTGCGCCATGGAGGAAACACAAGTACATGCAAGCTAAGTGGTTCGGCACGTGCGTGAGGTCCACGGTGGAACCATTGCCTATAACATACTCTACCAAGCAACAAAAGCCTAAGGCTTCGTTGCTCACTTTTGATTTATTAGATAGCATTCATGGCTTGCATTGTGCTCCAGTTGAGGTCGTGTGA 858 0.3998 MDKEFFTVPVTSQSSDEVTFADTVFGFWDSSDSISNHNDNDDDNDNDDNIFIEKNNKTFWEEQDQLLKGILCRTSSRETKVREATKEVVGELKVSEMVCICQRQVVAKSCRNCFLREICDRLLNLGYNCAICKSKWRSSPQIPSGEHTYLEVTDNSSNTKRGAVKVVIELSFRAEFEMARANEEYNQLVKRLPEVFVGKSERLRALVKIMCSAAKTCMKENKMHIAPWRKHKYMQAKWFGTCVRSTVEPLPITYSTKQQKPKASLLTFDLLDSIHGLHCAPVEVV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01133 285 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 117 245 IPR006502 -
Cca04g01133 285 PANTHER OS03G0796600 PROTEIN 14 285 IPR006502 -
Cca04g01133 285 Pfam PDDEXK-like family of unknown function 22 244 IPR006502 -
Cca04g01133 285 PANTHER DUF506 FAMILY PROTEIN 14 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01133 Cca-Chr4 12953957 12955469 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01133 - - gmx:100815222 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01133 04 12953957 12955469 Cca04g01133 04 12953957 12955469 ECH
Cca10g00878 10 10048172 10050360 Cca04g01133 04 12953957 12955469 PCT