Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00837 ATGGAACCCTCAGTTGTCCACAGTTACAATAGTAATGGCACCACCACCGCCAATGGCAACTGCACCAGCGACTTTGATATCATTTCCTGGTTTGAACAAGTGTCTAAGAACGCCGCTTCTACTCAGACTCAGACGCTATGCCGGATTCTGAGGCAGAACTGTGGCGTGGAATATCTGAAGAAATGGTTGGGGAGCTACAATGTCTCAGAGATGGATGCTTGTGCGTTGGAATCTCTTTTTACTTCTGTGGTTCCCCTTGCTTCTCATGCAGATTTAGATCCGTATATCCAAAAAATTGCAGATGGAGACACCACTCCTATACTCATACAACAACCCATAACCACGCTTTCCTTAAGTTCTGGAACCACAGAGGGAAGGCAGAAGCTCGTACCCTTTACCCGCCATAGTGCTCAAATGACCCTACAAACTTCGACTTTAGCAGCAGCCTATAGATCAAGGGTTTTTCCCACAAGGGAAGGAGGTAAGATTCTTGAATTCATATACAGCAGCAAACAGTTCAAAACAAAAGGAGGTTTAACCGTTGGAACAGCCACAGCACACGTCTACGCAAGTGAAGAATTTAAAATCAAACAGGAGAAAACAAAGGCATTCACTTGCAGCCCCTATGAAGTTATTTCGGGAGGGGACTATAAACAATCCACGTATTGCCACCTCCTTCTTGGTCTCTTCTTCTCTGATTACATAGAGTTTATTTCCTCAACCTTTGTCTATGCCACAGTGCAAGCTTTTTGCATATTCGAAGAGGTTTGGAAAGACCTTTGCAATGACATAAGAGATGGTACTTTGAGTTCAAGAATCAAGTTACCCAAAATGAGAGAGGCTGTTTTGGGAATCATATCGCCAAACCCCTCTTTGGCCTCAAAACTAGAAGCCACTTGCTTGGAGCTAGAAGTGGTGGATTGGTTTGGTATGATTCCCAAACTTTGGCCAAATGCCAAGTACGTTTGTTCCATAATGACAGGTTCTATGCAACCTTATTTGAAAAAGCTTAGGCATTATGCAAATGGGATGCCACTAATAGGTGCTGACTATGGTTCAACTGAGAGTTGGATCGGGGTTAATGTGGATCCTAGTTTGCCTCCAGAGAAAGTAACCTTTGCTGTAGTGCCCACGTTTTCTTACTTCGAGTTCTTACCACTTTATAGACAGAAACAAGATTGCAACTTAGTAGCCAATCATCATGATTTCATGGAAGACAAGCCAATCCCACTATCCCAGGTTAAAGTTGGCCAAGAGTACGAAATAGTGCTCACAACTTTCACTGGGCTGTACAGGTACAGACTAGGAGATGTGGTGGAAGTAATGGGACCCCAAAACTGA 1341 0.437 MEPSVVHSYNSNGTTTANGNCTSDFDIISWFEQVSKNAASTQTQTLCRILRQNCGVEYLKKWLGSYNVSEMDACALESLFTSVVPLASHADLDPYIQKIADGDTTPILIQQPITTLSLSSGTTEGRQKLVPFTRHSAQMTLQTSTLAAAYRSRVFPTREGGKILEFIYSSKQFKTKGGLTVGTATAHVYASEEFKIKQEKTKAFTCSPYEVISGGDYKQSTYCHLLLGLFFSDYIEFISSTFVYATVQAFCIFEEVWKDLCNDIRDGTLSSRIKLPKMREAVLGIISPNPSLASKLEATCLELEVVDWFGMIPKLWPNAKYVCSIMTGSMQPYLKKLRHYANGMPLIGADYGSTESWIGVNVDPSLPPEKVTFAVVPTFSYFEFLPLYRQKQDCNLVANHHDFMEDKPIPLSQVKVGQEYEIVLTTFTGLYRYRLGDVVEVMGPQN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00837 446 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 22 443 IPR004993 -
Cca10g00837 446 Pfam GH3 auxin-responsive promoter 30 443 IPR004993 -
Cca10g00837 446 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 22 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00837 Cca-Chr10 9651112 9654936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00837 26 446 EF-hand Containing Proteins AT1G23160 33.255 1.65e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00837 K14487 - gmx:100814683 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00837 10 9651112 9654936 Cca10g00837 10 9651112 9654936 ECH
Cca10g00837 10 9651112 9654936 Cca04g01097 04 12305983 12310469 PCT