Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01097 ATGCCTCAGCACCAACCAACTCCAATGGAACCACTTGTGAGCTACTACAACAATGGCAATGGCGACAGTGTCTGTGACATCATAAGCTGGTTTGAAGTTGTGTCCCAGAACGCTGGCCATGTTCAGACTCAGTTGCTGTGCCAGATTCTGAAGCAGAACTATGGGGTGGAGTATCTCAAGAAATGGTTGGGGAACTACAATATCCTTGAGATGGAACCATGTGCATTGGAATCCCTTTTCTCTTCTGTGGTTCCCCTTGCTTCACATGCTGATTTTGACCCTTATATCCAACGGATTGCAGATGGGGAGACAGCTCCTTTACTCACTCAACAACCCATAACACATCTTTCCTTAAGTTCTGGAACCACAGAGGGAAGGCAGAAGTTCGTACCCTTTACTCGCCATAGTGCACAAACCACGCTTCAAATATTCACCTTAGCAGCAGCCTATAGATCAAGGGTCTATCCTACTAGGGAAGGTGGAAGAATTCTTGAGTTTATATACAGCAGCAACCGGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACAGCCACAACACACTACTATGCTAGTGAAGAATTCAAAATCAAGCAGCACAAGACCAAGTCATTTACTTGCAGCCCTGAAGAAGTGATTTCTGGTGGAGACTACAAGCAATCCACATACTGCCACCTCCTTCTTGGCCTATTCTTCTCCGACCAAGTTGAGTTCATCACCTCAGCTTTTGTCTATAGCATGGTGCAAGCTTTCAGCAGCTTTGAAGAACTTTGGAGAGAGATTTGCAATGACATCAGAGATGGAACCCTGGGTTCAAGGATCAAGTCACCCAAAATGAGAAAGGCTGTTTTGGAGATCATATCTCCAAACTCAAATTTGGCTTCAAAGTTAGAGGCTGCTTGCCAGGAGCTAGAAGAGGTGGATTGGTTTGGTTTGATTCCTAAACTTTGGCCAAAGGCCAAGTATGTGTATTCCATTATGACAGGGTCCATGCAACCATATTTGAAGAAACTTAGGCATTATGCAAATGGGTTGCCTTTGGTTAGTGCTGACTATGGCTCGACAGAGAGCTGGATAGGGGTCGATGTGGATCCTAGTTTACCACCAGAAGATGTAACATTTGCTGTGGTGCCCACTTTCTCATACTTTGAGTTCATACCACTTCACAGGCATGAAAAAGGTTTCAGTTCAGGCGGTGATGATTTCTTGGAAGATAAACCAATTCCACTATCTCAGGTTAAAGTTGGCCAAGAGTATGAAGTTGTGCTCACAACTTTCACTGGACTGTACAGGTGCAGGCTAGGCGACGTGGTGGAGGTGGCTGGGTTCCACAAAGGGACACCAAAGCTGAACTTTGTGTGCAGAAGAAAGCTAATTCTGACAGTAAACATAGACAAGAACACAGAAAAGGACCTTCAGCTAGTGGTGGAGAGAGGGTCTGAAATTCTGAACAAAGCAAAGGGGGAGCTGGTAGATTTCACAAGCTACGCAGATGTATCAAACCAACCGGGGCACTACGTGATTTACTGGGAGATAAAGGGGAAGGTAGAGGACAAGGTCCTTGGAGCATGTTGCACAGAAATGGACAAGTGTTTTGCTGATCATGGCTACGTGGTTTCCAGGAAAACCAACTCCATAGGGCCCTTGGAGCTGTGCGTTTTGGAGAGAGGGACTTTTAAGAAGATTTTGGATAGCTTCATAGCCAATGGGGCAGCCTTGAGCCAATTCAAGACCCCCAGGTGCACCAACAATCATGTCCTCCTTAAGATTCTTAACACGTGCACCACCAAAAAGTTTCGCAGCACAGCCTATACTTGA 1815 0.4551 MPQHQPTPMEPLVSYYNNGNGDSVCDIISWFEVVSQNAGHVQTQLLCQILKQNYGVEYLKKWLGNYNILEMEPCALESLFSSVVPLASHADFDPYIQRIADGETAPLLTQQPITHLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPTREGGRILEFIYSSNRFKTKGGLTVGTATTHYYASEEFKIKQHKTKSFTCSPEEVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSMVQAFSSFEELWREICNDIRDGTLGSRIKSPKMRKAVLEIISPNSNLASKLEAACQELEEVDWFGLIPKLWPKAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVDVDPSLPPEDVTFAVVPTFSYFEFIPLHRHEKGFSSGGDDFLEDKPIPLSQVKVGQEYEVVLTTFTGLYRCRLGDVVEVAGFHKGTPKLNFVCRRKLILTVNIDKNTEKDLQLVVERGSEILNKAKGELVDFTSYADVSNQPGHYVIYWEIKGKVEDKVLGACCTEMDKCFADHGYVVSRKTNSIGPLELCVLERGTFKKILDSFIANGAALSQFKTPRCTNNHVLLKILNTCTTKKFRSTAYT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01097 604 Pfam GH3 auxin-responsive promoter 30 583 IPR004993 -
Cca04g01097 604 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 24 603 - -
Cca04g01097 604 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 24 603 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01097 Cca-Chr4 12305983 12310469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01097 26 601 EF-hand Containing Proteins AT1G23160 35.533 2.12e-119 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01097 K14487 - gmx:100792358 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01097 04 12305983 12310469 Cca04g01097 04 12305983 12310469 ECH
Cca10g00837 10 9651112 9654936 Cca04g01097 04 12305983 12310469 PCT