Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00822 ATGAGGCGAAGAACGACGGATTTTCGTAGGCCAGTGCGTAGGAGGGTTCCAGATGCGTTGTGGTGGGCATTGTGCTGTGCAGTGATTCTTCTCTTTGTCTATATTCTCAGCAAAGGGAACAAAATTGAGTCCAGACCCGCTTTGACAAAGAGACCTTACAAGCATGATAAGATTATGGAAAGCCTTAATATTACTGAAGAGATGTTAAGCTCTAACTCAGTCACAAGACAACTTAATGATCAGATATCCCTGGCAAAAGCTTTTGTTGTAATTGCAAAAGAAAGTAACAATCTCCAATTTGCTTGGGAATTAAGTGCCCAGATCCACAATTCGCAGATGCTCCTCTCAAATGCTGCCACTAGGCGTGTTCCTTTAACAACCAGGGAAACAGATAGGGCTATCCATGATATGGCATTATTGTTATACCAGGCCCAGCAGCTCCATTATGATAGTGCAAACATGATCATGAGATTCAAAGCAAAGATTCAAGCTCTTGAGGAACAGATGAATTCTGTTAGTGAAAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGCCTGTATTGTCTTGGTGTCCGGTTGACAACAGAATGGTTCAAAAACTTTAATTTGCAAAAGAAATTGAAGGACAAAAGGCATGTGGAGATGAAGCTTAAGGATAACAATCTTTACCACTTTTGTGTTTTCTCTGATAACATTCTTGCAACTTCAGTTGTGGTCAATTCAACTGCAATGAATTCAAAAAACCCTAATATGATTGTTTTCCACCTTGTCACTGATGAAATAAACTATGCTGCAATGAAGGCATGGTTCACTATGAATGATTTCCGTGGGGTGACAGTTGAAGTTCAGAAGTTTGAAGACTTTAGTTGGTTAAATGCTTCATATGTTCCTGTGCTCAAGCAACTTCAAGATTCAGAAATACAGAGCTACTACTTTTCTGGCAATAGTGATGAGGGAAGGACACCTATCAAGTTCCGAAACCCTAAATATCTTTCCATGCTTAATCACCTGAGATTCTACATCCCTGAAGTTTTTCCTGCACTAAAGAAGGTGGTGTTCCTCGACGATGATGTTGTGGTTCAGAAGGATCTTTCTGGTCTTTTCTCCATTGATTTGAATGGGAATGTAAATGGAGCTGTTGAAACATGCATGGAAACATTTCACAGATACCACAAATACTTGAACTATTCCCATCCTCTTATACGCACACATTTTGATCCTGATGCTTGCGGTTGGGCATTTGGGATGAATGTGTTTGATTTGGTTGAATGGAGGAAAAAGAATGTAACTGGCATCTACCACTACTGGCAGGAAAAGAATGTAGACCGGACATTGTGGAAACTCGGTACCTTGCCTCCTGGATTATTGACATTTTATGGATTAACTGAACCCTTGGATCCATCATGGCATGTTTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTAATAGAGAGAGGAGCTGTACTTCACTTCAATGGGAACTCCAAACCATGGTTGAAGATTGGGATTGAGAAGTACAAGCCTTTATGGGAAAAATATGTTGAATACTCTCATCCGTTATTGCAACAGTGTAACTTTCATTGA 1602 0.4001 MRRRTTDFRRPVRRRVPDALWWALCCAVILLFVYILSKGNKIESRPALTKRPYKHDKIMESLNITEEMLSSNSVTRQLNDQISLAKAFVVIAKESNNLQFAWELSAQIHNSQMLLSNAATRRVPLTTRETDRAIHDMALLLYQAQQLHYDSANMIMRFKAKIQALEEQMNSVSEKSSKYGQIAAEEVPKSLYCLGVRLTTEWFKNFNLQKKLKDKRHVEMKLKDNNLYHFCVFSDNILATSVVVNSTAMNSKNPNMIVFHLVTDEINYAAMKAWFTMNDFRGVTVEVQKFEDFSWLNASYVPVLKQLQDSEIQSYYFSGNSDEGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSGLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRTHFDPDACGWAFGMNVFDLVEWRKKNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLWEKYVEYSHPLLQQCNFH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00822 533 Pfam Glycosyl transferase family 8 235 507 IPR002495 GO:0016757
Cca10g00822 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 533 IPR029993 GO:0047262
Cca10g00822 533 CDD GT8_like_1 228 520 - -
Cca10g00822 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 528 IPR029044 -
Cca10g00822 533 Coils Coil 155 175 - -
Cca10g00822 533 PANTHER GALACTURONOSYLTRANSFERASE 10-RELATED 3 533 - -
Cca10g00822 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00822 Cca-Chr10 9452812 9456847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00822 1 533 Glycosyltransferase AT2G20810 79.851 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00822 K13648 - gmx:100792018 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00822 10 9452812 9456847 Cca10g00822 10 9452812 9456847 ECH
Cca10g00822 10 9452812 9456847 Cca04g01085 04 12146011 12148735 PCT