Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01085 ATGAGGCGAAGGGGTGCAGATTTTCGAAGGCCGGGGAGGAGAAGCCTTAAAGATGTCGTGTGGTGGACATCATGTACCGTTTTGCTTCTTTTCTTTATTTATATCCTCACCAAAGGCAACACCAACATTGACTCCACACAACATTTCTCCAGGCGAAATTTCAGCCATGACAGGGTTATAGAAGGCTTCAATGTCACAGAAGAAATGTTAAGCCCTGACTCAGTGAGCAGACAAATTAATGATCAGATCTCCCTGGCAAAAGCTTATCTTGTAATTGCCAAAGAAAGTAATAATCAACAATTTGCTTGGGAGTTAAGTGCTCAGATCCGCATTTCACAGATTTTCCTCTCAAATGCTGCCACTAGGCGTGCTCCGTTAACAATAAAGGAATCAGAACATGTTATTGGCGATATGGCGTTAGTACTATATCAGGCCCAGCAGCTCCATTATGACAGTGCAATCATGATCATGAGACTGAAAGGAAAAATTCAAGCTCTTGAAGAACAGATGAATTCTGCAAGTGAGAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAGGCCCTATATTGCCTTGGTGTCAGGTTGACATCTAGATGGTTCAATGATCTTAGCTTGCAAAAGAAATTGAAGGACAAAAAACAAGTGATGAAACTCAAGGATAATGATCTTTACCACTTTTGTATCTTCTCTGACAACATTCTTGCCACTTCAGTTGCAATCAATTCAACTGCAATAAATTCTAAAAATCCAGATAAGGTTGTTTTCCACCTTGTCACTGATGAAATAAGTTATGCTGCAATGAAGGCATGGTTTGCTTTGAACGATTTTCGAGGCGTGACAGTTGAAGTTCAAAAGTTTGAAGACTTCAGCTGGCTAAATGCTTCATATGTTCCCGTGCTTAAGCAGCTCCAAGACTCAGAGATTCAGAACTATTACTTCAAAGGCAACAGTGATGATAACAAGACTCCGATCAAGTTCCGGAATCCAAAATATCTGTCCATGCTTAACCACCTGAGGTTCTACATCCCTGAAGTTTTTCCTGAGCTGAAGAAGGTGGTGTTCCTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTACCATTGATTTGAATGGAAATGTTAATGGGGCTGTTGAGACATGCATGGAGACATTTCATAGGTACCATAAATATTTGAACTACTCACACCCTCTAATAAGAGCACATTTTGACCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTGTTTGATTTGGTTCAATGGAGGAATAGGAATGTAACTGGTATCTACCATTATTGGCAAGAAAAGAATGCAGACAGAACATTGTGGAAACTTGGTACCTTGCCACCAGGGTTGTTAACCTTTTATGGGCTAACTGAGCCCTTGGATCCATTATGGCATGTGTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTGATTGAAAGAGGGGCTGTTCTACACTTCAATGGGAACTCCAAACCATGGTTGAAGATTGGGATGGAAAAGTACAAGCCTCACTGGGAAAAATACGTGGATTATTCTCACCCTTTCTTGCAACAGTGTGTGCAATGA 1599 0.4096 MRRRGADFRRPGRRSLKDVVWWTSCTVLLLFFIYILTKGNTNIDSTQHFSRRNFSHDRVIEGFNVTEEMLSPDSVSRQINDQISLAKAYLVIAKESNNQQFAWELSAQIRISQIFLSNAATRRAPLTIKESEHVIGDMALVLYQAQQLHYDSAIMIMRLKGKIQALEEQMNSASEKSSKYGQIAAEEVPKALYCLGVRLTSRWFNDLSLQKKLKDKKQVMKLKDNDLYHFCIFSDNILATSVAINSTAINSKNPDKVVFHLVTDEISYAAMKAWFALNDFRGVTVEVQKFEDFSWLNASYVPVLKQLQDSEIQNYYFKGNSDDNKTPIKFRNPKYLSMLNHLRFYIPEVFPELKKVVFLDDDVVVQKDLSDLFTIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVQWRNRNVTGIYHYWQEKNADRTLWKLGTLPPGLLTFYGLTEPLDPLWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGMEKYKPHWEKYVDYSHPFLQQCVQ 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01085 532 CDD GT8_like_1 228 521 - -
Cca04g01085 532 PANTHER GALACTURONOSYLTRANSFERASE 10-RELATED 4 531 - -
Cca04g01085 532 Coils Coil 156 176 - -
Cca04g01085 532 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
Cca04g01085 532 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 525 IPR029044 -
Cca04g01085 532 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 4 531 IPR029993 GO:0047262
Cca04g01085 532 Pfam Glycosyl transferase family 8 233 507 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01085 Cca-Chr4 12146011 12148735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01085 1 530 Glycosyltransferase AT2G20810 76.217 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01085 K13648 - gmx:100792018 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01085 04 12146011 12148735 Cca04g01085 04 12146011 12148735 ECH
Cca10g00822 10 9452812 9456847 Cca04g01085 04 12146011 12148735 PCT