Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00811 ATGGAGCTGGAGACTCAAACTCAAAAATCATGCTCTGATGGCAAGGTTTGGAGATTTTGTAGAATGCCATTTTGGCAAACAACTCACCCTCCTTCGTCTTCTTCCATGTCTGATATGCACAATGTTCATCCTCAAAACCATCTTCAATCTGTTGTTGATAGACCCACTCATCATTCTTCAACCACAGTTTCATCTGTGGCTAAGTCTCTGCTCCCTACCAAGAGGAGGCTCCGTCTGGATCCTCCCAACAACCTCTATTTTCCCTATGAACCTGGTAAGCAAGTCAGGAGTGCAATCGCAATTAAAAACACTTGCAAGTCTCATGTAGCTTTCAAGTTTCAAACAACTGCACCCAAGAGCTGTTATATGCGCCCTCCAGGTGGTATTCTTGCCCCTGGTGAAAGTATTATCGCCACTGGTAATTTGTCTTCTAAACTCCTGTTAAGTGACGTTATCAAATGCTTAGAATTTGGTGAATCCTCTTACTGCCTCACATATATGGCAGTATTCAAGTTCGTGGAGCCACCAGAGAACAATGAGAAAGCAATTGATCAAAAAAGCAAGGTTAAGTTTAAAATCATGAGCCTAAAAGTGCAAGGTGAACTGGACTATGTACCGGAACTGTTTGATGAGCAAAGAGATGAAGTGGCAGTAGAGCAAATTCTCCGGGTCATTTTTCTGGACCCTGAACGGCCTAGCCCTGTCCTGGATAAGCTTAAACAGATGTTGGCTGAGGCTGAGGCTGCACTTGAAGCACGAAAGAAACTGCCGGAGGAGAAAGGTCCTCAAGTAGCCGGGGAGGGCCTTGTTATAGATGAATGGAAAGAAAGAAGAGAAAGATACCTGGCTCGGCAGCAGGTCCAAGGTGTTGATTCAGTGTAA 882 0.4456 MELETQTQKSCSDGKVWRFCRMPFWQTTHPPSSSSMSDMHNVHPQNHLQSVVDRPTHHSSTTVSSVAKSLLPTKRRLRLDPPNNLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMRPPGGILAPGESIIATGNLSSKLLLSDVIKCLEFGESSYCLTYMAVFKFVEPPENNEKAIDQKSKVKFKIMSLKVQGELDYVPELFDEQRDEVAVEQILRVIFLDPERPSPVLDKLKQMLAEAEAALEARKKLPEEKGPQVAGEGLVIDEWKERRERYLARQQVQGVDSV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00811 293 Coils Coil 236 256 - -
Cca10g00811 293 Pfam MSP (Major sperm protein) domain 77 139 IPR000535 -
Cca10g00811 293 Gene3D Immunoglobulins 72 231 IPR013783 -
Cca10g00811 293 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 35 139 IPR016763 GO:0005789
Cca10g00811 293 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 168 292 IPR016763 GO:0005789
Cca10g00811 293 PANTHER VESICLE-ASSOCIATED MEMBRANE-PROTEIN-ASSOCIATED PROTEIN-RELATED 35 139 - -
Cca10g00811 293 PANTHER VESICLE-ASSOCIATED MEMBRANE-PROTEIN-ASSOCIATED PROTEIN-RELATED 168 292 - -
Cca10g00811 293 SUPERFAMILY PapD-like 75 227 IPR008962 -
Cca10g00811 293 ProSiteProfiles Major sperm protein (MSP) domain profile. 76 227 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00811 Cca-Chr10 9345948 9350174 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00811 - - gmx:100816998 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00811 10 9345948 9350174 Cca10g00811 10 9345948 9350174 ECH
Cca10g00811 10 9345948 9350174 Cca04g01081 04 12093014 12096010 PCT