Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01081 ATGGCGCTGGAGAGTGACAAAACGGGTTCTGATGGGAAAGTTTGGAGCTTTTGCAGCATGCCATTTTGGCAAACAACTCATGcttcttcatcttcttcttcaacttcttctATGCATAATAGTGTTCACCATCAGAGTCAGATTCTTCAGTCTCTTGATAGATCCACTCATCCACCTTCCACCACTGTTTCTTCCGTGGCTAAGTCTCTTCTCCCAACAAGGAGAAGGCTCCGTTTGGATCCTCCCAACAAGCTCTACTTTCCTTATGAACCTGGTAAGCAAGTTAGGAGCGCCATCGCAATTAAAAACACTTGCAAGTCTCATGTAGCTTTCAAGTTTCAAACAACTGCACCCAAGAGTTGTTATATGCGCCCTCCAGGTGGTATTCTTGCACCTGGTGAAAGTATAATTGCAACTGTATTTAAGTTTGTGGAGCCACCAGAGAACAATGAGAAACCAATTGTTGATCAAAAGAGCAGGGTTAAGTTTAAAATCATGAGCTTAAAAGTGAAAGGCGAAATGGACTATGTACCAGAACTGTTTGACGAGCAAAGGGATCATGTAGCAGTAGAGCAAATTTTGCGTGTGGTTTTTCTGGAACCCGAACGCCCTACCCCTGCTATGGACAAACTTAAACGCCAGCTGGCGGAGGCCGAGGCCGCGTTGGAAGCAAGAAAGAAGCCCCCAGAGGAGACAGGTCCTAGAGTAGCTGGAGAAGGACTTGTTATAGATGAATGGAAAGAAAGAAGAGAAAGATACCTGGCCAGGCAGCAGGTTGAAGTGGTAGATTCAGTGTAA 798 0.4386 MALESDKTGSDGKVWSFCSMPFWQTTHASSSSSSTSSMHNSVHHQSQILQSLDRSTHPPSTTVSSVAKSLLPTRRRLRLDPPNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEPPENNEKPIVDQKSRVKFKIMSLKVKGEMDYVPELFDEQRDHVAVEQILRVVFLEPERPTPAMDKLKRQLAEAEAALEARKKPPEETGPRVAGEGLVIDEWKERRERYLARQQVEVVDSV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01081 265 MobiDBLite consensus disorder prediction 29 68 - -
Cca04g01081 265 ProSiteProfiles Major sperm protein (MSP) domain profile. 76 199 IPR000535 -
Cca04g01081 265 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 32 264 IPR016763 GO:0005789
Cca04g01081 265 Gene3D Immunoglobulins 72 203 IPR013783 -
Cca04g01081 265 Pfam MSP (Major sperm protein) domain 77 188 IPR000535 -
Cca04g01081 265 PANTHER VESICLE-ASSOCIATED MEMBRANE-PROTEIN-ASSOCIATED PROTEIN-RELATED 32 264 - -
Cca04g01081 265 SUPERFAMILY PapD-like 65 206 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01081 Cca-Chr4 12093014 12096010 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01081 - - gmx:100820576 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01081 04 12093014 12096010 Cca04g01081 04 12093014 12096010 ECH
Cca10g00811 10 9345948 9350174 Cca04g01081 04 12093014 12096010 PCT