Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00804 atggccgctctcacttctctctctttctccgcactcactcaatgctcacGAACAAAGCCTTCTCTCGCTTCCACTTCAGCTGACATCTTTGCCTTTCGCACCCATTTCTCCTACCACTATGTCACTGTTCGAGCTTCCAATTATTCAGCTTCTAAGATGGTTCTTCAATGCATGTCTTCTGCTACAGATGTTCCCCCCACTGTTTCTGAGACGAAGTTAAATTTCCTCAAGACGTATAAGCGACCAATCCCTAGTATCTACAATAATGTGCTGCAGGAGCTGATAGTGCAACAACATTTAATGAGATACAAGAGATCATACCGTTATGACCCTGTCTTTGCTCTTGGTTTTGTTACTGTATATGATAAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCATCTTCCAAGCCTACATCAATGCATTGAATGAAGATCCAGAACAATACAGAATAGATGCAAGAAAGTTGGAAGAGTGGGCTCGGGTTCAAAACCCTAGTTCTCTGGTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAGGGAATTTTAAAGGATATTGCAAAAAGAGCAGGGGGAAAAGGGGAATTCAGTAATAGTCGTTTCTTTGCTGTAGGCCTCTTTCGGCTTCTCGAGTTAGCAAATACCACAGAACCAACAATTTTGGACAAGGTTAAACCAATTCATTTAAGACTTATGATTTGGAATTATTCAAATACTCATTTCATTACACTATTTTGA 744 0.3763 MAALTSLSFSALTQCSRTKPSLASTSADIFAFRTHFSYHYVTVRASNYSASKMVLQCMSSATDVPPTVSETKLNFLKTYKRPIPSIYNNVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDARKLEEWARVQNPSSLVEFSSKEGEVEGILKDIAKRAGGKGEFSNSRFFAVGLFRLLELANTTEPTILDKVKPIHLRLMIWNYSNTHFITLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00804 247 Pfam Thylakoid formation protein 67 217 IPR017499 GO:0010207|GO:0015979
Cca10g00804 247 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 227 - -
Cca10g00804 247 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 227 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00804 Cca-Chr10 9291817 9294935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00804 - - gmx:100814341 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00804 10 9291817 9294935 Cca10g00804 10 9291817 9294935 ECH
Cca10g00804 10 9291817 9294935 Cca04g01078 04 12059174 12064378 PCT