Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01078 ATGGCCGCAGTTACCTCTTCTTTCTCTTTCTCCACACTCACTCAATCTTCGCATAGAAACCTCAAACTCTCTTCCAATTCACCAACCTTTCGCTTCCGCGTTGGTTTCTCCTGCCACTATGTTGGAGTTCGAGCTGCCAATTTTGCTTCCAAAACCGTTGTTCGCTGCTCCACTTCCGTCTCAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCAATTCCTAGCATCTACAACTCGGTGCTGCAGGAGCTTATTGTTCAGCAACATTTAATGAGATATAAGAGATCATATCGCTATGATCCTGTATTTGCCCTTGGCTTTGTCACTGTGTATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGATCGAGATGCCATCTTCCAAGCATACATTCAGGCATTGAATGAAGATCCTGAGCAATACAGAGTAGATGCAAAGAAACTGGAAGAGTGGGCTCGGGCTCAAAACCCAACTTCGCTAATAGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGATCACTAAAGGATATTGCAGAAAGAGCGGGAGGAAAGGGGGATTTCAGTTATAGTCGCTTCTTTGCAATAGGCCTCTTTCGTCTTCTCGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTCTGTGCAGTTTTAAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGACGTGTATCGCAATTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGCTGCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGATTGAACCACAAAAGACTAATGAGGCCATTACACAACAGCAATTTTCTGGCCTTTAG 867 0.4325 MAAVTSSFSFSTLTQSSHRNLKLSSNSPTFRFRVGFSCHYVGVRAANFASKTVVRCSTSVSDPPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIQALNEDPEQYRVDAKKLEEWARAQNPTSLIEFSSREGEVEGSLKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERIEPQKTNEAITQQQFSGL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01078 288 MobiDBLite consensus disorder prediction 264 288 - -
Cca04g01078 288 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 62 267 IPR017499 GO:0010207|GO:0015979
Cca04g01078 288 Hamap Protein Thf1 [thf1]. 60 268 IPR017499 GO:0010207|GO:0015979
Cca04g01078 288 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 281 - -
Cca04g01078 288 Pfam Thylakoid formation protein 65 270 IPR017499 GO:0010207|GO:0015979
Cca04g01078 288 Coils Coil 242 269 - -
Cca04g01078 288 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 281 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01078 Cca-Chr4 12059174 12064378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01078 - - gmx:100779964 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01078 04 12059174 12064378 Cca04g01078 04 12059174 12064378 ECH
Cca10g00804 10 9291817 9294935 Cca04g01078 04 12059174 12064378 PCT