Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00781 ATGGTCAACAGTGAGGTTCCAACACGTCTTGAGGGAAAATATGCTGCAATAGTGGTTTGCTGGCTCCTTGGCAATGGATGCCTTTTCTCATGGAATAGTATGCTGACAATAGAAGATTACTACGGATACTTATTTCCCAAATACCACCCATCTAGGGTGCTTACTCTTGTTTATCAGCCATTTGCAGTTGGAACACTTGCAATACTGACGTATAATGAGGCAAAACTCAATACACGAACACGGAATCTGTTTGGATATATACTTTTTTTCATTAGCACTTTGTTGGTGTTAATTTTAAATTTAGCAACATCTGGTAAAGGAGGGATTGGAACTTTCATCGGTATATGTGCACTTAGTGGTGCTTTTGGAGTTGCAGATGCTCATGTTCAAGGTGGAATGGTGGGAGACTTGTCCTACATGAAACCAGAATTCATTCAGTCTTTCCTTGCTGGTTTGGCAGCATCTGGTGCATTAACCTCTGCTTTGAGGTTAATTACAAAAGCAGCATTTGATAATTCTGGGGATGGTCTTCGCAAAGGAGCCATTCTTTTCTTTGCCATTTCAACATTCTTTGAGCTCCTTTGTGTTGTTCTCTACGCATTTATTTTCCCTAAAATACCAATTGTGAAGTACTTCCGCTCAAAGGCAGCATCAGAAGGATCCAAAACTGTTTCATCTGACCTTGCAGCTGGAGGCATTCGGACATTACCTGGAGAAGCCAATGAATATACAAAAGATACAGAACGGAAGGGAAACAAGCAATTGTTATTGGAAAACATTGACTATGCACTTGATATGTTCTTAATCTATACGCTAACCCTGTCTATTTTCCCTGGATTCCTGTCAGAAGATACTGGATCACATAGTTTAGGCACATGGTATGCTCTCGTTTTAATTGCCATGTATAATGTATGGGATCTGATTGGAAGATACATTCCACTCTTGAAATGCTTGAAGTTGGAGTCCCGAAAGTTGATCACAATCGCCATTCTTAGCCGTTTTTTACTTGTTCCAGCATTTTATTTCACAGCAAAGTATGGTGACCAAGGTTGGATGATAATGTTAACGTCCTTCTTGGGGCTATCCAATGGTTACCTCACTGTCTGTGTTCTAACATCTGCACCCAAAGGATACAAGGGCCCAGAACAAAATGCCTTGGGAAACCTATTGGTGTTGTTTCTTCTTGGAGGTATTTTTGCAGGGGTAACACTTGATTGGCTTTGGTTAATAGGTAAAGGGTGGTGA 1245 0.4064 MVNSEVPTRLEGKYAAIVVCWLLGNGCLFSWNSMLTIEDYYGYLFPKYHPSRVLTLVYQPFAVGTLAILTYNEAKLNTRTRNLFGYILFFISTLLVLILNLATSGKGGIGTFIGICALSGAFGVADAHVQGGMVGDLSYMKPEFIQSFLAGLAASGALTSALRLITKAAFDNSGDGLRKGAILFFAISTFFELLCVVLYAFIFPKIPIVKYFRSKAASEGSKTVSSDLAAGGIRTLPGEANEYTKDTERKGNKQLLLENIDYALDMFLIYTLTLSIFPGFLSEDTGSHSLGTWYALVLIAMYNVWDLIGRYIPLLKCLKLESRKLITIAILSRFLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVLTSAPKGYKGPEQNALGNLLVLFLLGGIFAGVTLDWLWLIGKGW 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00781 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 122 144 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cca10g00781 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 150 170 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cca10g00781 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 270 287 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cca10g00781 414 PRINTS Delayed-early response protein/equilibrative nucleoside transporter signature 326 343 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cca10g00781 414 PIRSF ENT 5 412 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cca10g00781 414 PANTHER EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 2 3 413 IPR030200 -
Cca10g00781 414 Pfam Nucleoside transporter 124 408 IPR002259 GO:0005337|GO:0016021|GO:1901642
Cca10g00781 414 PANTHER EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3 413 IPR002259 GO:0005337|GO:0016021|GO:1901642
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00781 Cca-Chr10 9066311 9069289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00781 3 412 Organic Solute Cotransporters AT4G05120 70.732 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00781 K15014 - gmx:100798899 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00781 10 9066311 9069289 Cca10g00781 10 9066311 9069289 ECH
Cca10g00781 10 9066311 9069289 Cca04g01074 04 11994661 11998337 PCT