Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00757 ATGTCTGCAAATGCAGTAATGGCAGTTAAAGAACTTAGAGTTTCTTCGCTTACAACAACCTCACTTGCTTGTCACAATTCACGTTCATCCATGTTTCAACCACGGAACTTGTCGTTAAAAACATCAAGACCACCGATGATATATAACAATCTGTCGATCAAGTCCATTGCTTTCCGTGACAAGGTTCCTAGTCAAACTGATCCTAGTACAAGAAATTTGGAGCAAGTTAAAAGAAGAAGCCAAGAGTTATTGCTAAATTCAAGGGATCCAATTAAAACATTGAAGATAATTGACAACATCCAAAGGTTAGGAATTGGACACCATTTCGAAGAAGAGATCAACGTACAACTTGGAAGGGTAGGGGATTGGGACGTCACTCAAGACCTCTTAGCCACAGCCCTTCAATTTCGCCTGCTGAGGCATAACGGCTGGCCTGCTAGATCTGATGCTTTCAAGAAATTTTTAGACAACACTGGAAATTTCCAGGAATCAATCACCAATGACATTCGGGCCATGTTAAGTTTATATGAGGCATCATATTTAGGTGCGAAAGGAGAAGAAATATTACAGCAGGCCATGGACTTCTCCACGGCTCATTTGCACCAATCACTGCCACACCTAAGTCCTGAACTAGGAAGGATTGTTGCCAGATCCTTAACACTTCCAAGGCACTTAAGAATGGCTAGGTTAGAAGCTAAAAACTACATGGAAGAATATAGTCAAGCAAGTAGCCAAATACCATCTCTTTTGGAATTGGCAAAGTTGGACCATGTCATGGTTCAGATGATGCACCAAAAAGAATTAGCGGAGATCTCCGGGTGGTGGAAAAAGTTGGGACTTGTTGAAAGACTTGGTTTCGCTAGAGACAGACCGGAAGAGTGCTTCTTATGGACAGTGGGAGTTTTTCCAGAACCTTATTATTCAACTTGTCGCATTGAACTTACAAAGACCATATGCATTTTGCTAGTTATGGATGATATCTTTGACACTTATGGCACATTAGATGAACTTATTCTTTTTACCAAGGCAATCAAGAGGTGGGATCTTGATGCAATGGAACAGTTGCCTGAATATATGAAGATATGCTATATTGCGTTGTATAATACCACGCATGAAATTGCAAATAAAATTGAGAAAGCGCACGGAGAAAGCGTTGTTGCTTGCTTGAAAAGAACATGGACTGACATATTTGAAGCTTTTCTAAAAGAAGCCAAATGGTTCAACAACAAATACATTCCAACTTTTAGGGAATATTTGGATAATGGAGTGATTTCTTCGGGATCATACATGGCCATGGTGCATGCAACTTTCCTCGTTGGTGATGGCCTCTCAAAGGAAACCATTTCCATGATGAAGCCATATCCAAGGCTTTTCTCTTGCTCTGGGGAAATTCTTAGACTTTGGGACGACTTAGGAACTTCAAGGGAGGAACAAGAAAGAGGAGATAATGCTTGCAGCATACAATGTTTCATGACAGAAAATAACATTTCAGATGAAAATGTAGCCAGGAAACATATAAGAGAACTCATAAGGAACTTATGGCCGGAGCTAAACGGTCTTGCTATGACCACAAGTGCTCTACCATTATCAGTTATGAAGGCTTCTCTTAACATGGCTAGAACTGCTCAAGTTATTTATCAACATGGAGATGAGCAAAACGCATTTACAGTTGATGATTATGTAAAAACATTGCTCTTTACCCAACACTGA 1710 0.4012 MSANAVMAVKELRVSSLTTTSLACHNSRSSMFQPRNLSLKTSRPPMIYNNLSIKSIAFRDKVPSQTDPSTRNLEQVKRRSQELLLNSRDPIKTLKIIDNIQRLGIGHHFEEEINVQLGRVGDWDVTQDLLATALQFRLLRHNGWPARSDAFKKFLDNTGNFQESITNDIRAMLSLYEASYLGAKGEEILQQAMDFSTAHLHQSLPHLSPELGRIVARSLTLPRHLRMARLEAKNYMEEYSQASSQIPSLLELAKLDHVMVQMMHQKELAEISGWWKKLGLVERLGFARDRPEECFLWTVGVFPEPYYSTCRIELTKTICILLVMDDIFDTYGTLDELILFTKAIKRWDLDAMEQLPEYMKICYIALYNTTHEIANKIEKAHGESVVACLKRTWTDIFEAFLKEAKWFNNKYIPTFREYLDNGVISSGSYMAMVHATFLVGDGLSKETISMMKPYPRLFSCSGEILRLWDDLGTSREEQERGDNACSIQCFMTENNISDENVARKHIRELIRNLWPELNGLAMTTSALPLSVMKASLNMARTAQVIYQHGDEQNAFTVDDYVKTLLFTQH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00757 569 PANTHER OS04G0344100 PROTEIN-RELATED 60 567 - -
Cca10g00757 569 SUPERFAMILY Terpenoid synthases 247 554 IPR008949 -
Cca10g00757 569 SFLD Terpene Cyclase Like 1 C Terminal Domain 248 567 IPR034741 -
Cca10g00757 569 Pfam Terpene synthase family, metal binding domain 250 514 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca10g00757 569 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 70 243 IPR008930 -
Cca10g00757 569 PANTHER R-LINALOOL SYNTHASE PROTEIN-RELATED 60 567 - -
Cca10g00757 569 Coils Coil 225 245 - -
Cca10g00757 569 Pfam Terpene synthase, N-terminal domain 63 206 IPR001906 GO:0010333|GO:0016829
Cca10g00757 569 Gene3D Farnesyl Diphosphate Synthase 65 552 IPR008949 -
Cca10g00757 569 SFLD Isoprenoid Synthase Type I 248 567 - -
Cca10g00757 569 CDD Terpene_cyclase_plant_C1 73 566 IPR044814 GO:0010333|GO:0016102
Cca10g00757 569 Gene3D - 88 245 IPR036965 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00757 Cca-Chr10 8633105 8638045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00757 - - gmx:100807904 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00757 10 8633105 8638045 Cca10g00757 10 8633105 8638045 ECH
Cca10g00757 10 8633105 8638045 Cca04g01045 04 11444203 11448959 PCT