Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01045 ATGACCCTTCTAACTCCCACGTTTCATAGTTCCTTCTTCTTTTCACCTCTTACTTTTCGCAAACCACAAGGCCCTAATCTTCCCCACCAAACAATTATTTTCCCTCTCCGATGCAACGCAACCACAAACGTTGCCGTTTCTGAAAGAAAATCGGCCAAATACCAGCCAAACCTCTGGAATTACGATTTTCTGCAGTCCTTGAAGCATGACTATGTGGATACAAGATATGAGGAGAGGGCAAGGAAGCTGGAAGAGGAAGTGAGGAGAATGATAAAGGATGAAAATAGAAACATATGGGTGAAACTTGAACTGATTGATGAAGTGAAACGCTTAGGCATCGGATACCACTTTGACAAGGAGATAGGAGAAGCCCTTCATAGGTGGGTCTCTTCTCAAAGATTCAGTGGTGCAATCACTGATCACAGAAGCTTGCATGAAATTGCTTTAAGCTTCAGGCTCCTCAGAGAATATGGCTATGATGTCACAGCAGATACATTTGAGAAGTTTAAGGACCAGAACGGTAATTTCAAGGCAAGTCTTGGCAGAGATGTGAAGGGAATGTTGAGTTTATACGAGGCATCGTATCTGGGTTATGAAGGAGAACAGATTCTTGATGAGGCAAGGGCTTTCAGTAGCTTCCATCTAAGGGGTGCCCTAGATGAAGGTAGAATCAGTAGCATGGTCTTAGAAGAAGTGAATCACGCATTGGAACTTCCACTGCATCGTACAATCCAAAGGCTTGAAGCCCGTTGGTATATTGAATCTTATGCTAAAAGAAAAGACGCTAACCAAGTGCTGCTTCAAGCAGCAAAACTTGATTTTAACATCGTACAGTCAAGACTGCAAAATGATCTCCAAGAAATGTCAAGGTGGTGGAAAGGGATGGGTCTAGCCTCAAAGTTGAGCTTCAGCAGAGATAGGCTAATGGAATGCTTCTTTTGGACGGTTGGAATGGCCTTCCAGCCTCAGTTTAGTGATCTCCGCAAAGGTATAACGAAAGTGACATCCTTAATAACTACAATCGATGACGTGTACGATGTTTACGGCACCTTGGATGAATTACAACTTTTCACATCAGCTGTTGAAAGTTGGGATGTAAAAGCTGTTCAAGTTCTACCGGATTACATGAAGATATGCTTTTTAGCACTGTACAACACTGTCAACGAATTTGCTTATGATGTTCTTAAAGAACAAGGACAAGATATCCTTCCCTACCTCACCAAAGCATGGTCTGATATGTTGAAAGCATTCCTACAAGAAGCAAAGTGGTGTCGCGACAAACACGTGCCAAAATTCGAGGAGTACCTCAACAATGCATGGGTGTCAGTCTCTGGCGTAGTGATACTCACCCATGCCTATTTCTTGCTGAATCATAGCATAACAAAGGAGGCACTTGAGTCCTTGGACAATTACCACTCCCTGTTGCAAACACCATCCACTATTTTTCGACTTTGCAATGATTTGGGTACTTCAAAGGCGGAGTTAGAGAGAGGTGAAGCAGCAAGCTCGATTGTGTGTTACATGCGTGAAAGTGGTGCTAGTGAAGAGGGTGCTTACAAAAACATTCACAATTTGCTTAATGAAACGTGGAAGAAGATGAACAAAGATGGAATCAAGCATTCTCCTTTTCCAAAACCTTTTGTAGAAACTGCTATGAACCTTGCAAGAATTTCTCAGTGTACATACCAGTACGGAGACGCACATGGAGCCCCAGATAACACAGCCAAGAATCGCGTACGATCCTTGATAATTGAACCCATTGCCCTCTAA 1770 0.4282 MTLLTPTFHSSFFFSPLTFRKPQGPNLPHQTIIFPLRCNATTNVAVSERKSAKYQPNLWNYDFLQSLKHDYVDTRYEERARKLEEEVRRMIKDENRNIWVKLELIDEVKRLGIGYHFDKEIGEALHRWVSSQRFSGAITDHRSLHEIALSFRLLREYGYDVTADTFEKFKDQNGNFKASLGRDVKGMLSLYEASYLGYEGEQILDEARAFSSFHLRGALDEGRISSMVLEEVNHALELPLHRTIQRLEARWYIESYAKRKDANQVLLQAAKLDFNIVQSRLQNDLQEMSRWWKGMGLASKLSFSRDRLMECFFWTVGMAFQPQFSDLRKGITKVTSLITTIDDVYDVYGTLDELQLFTSAVESWDVKAVQVLPDYMKICFLALYNTVNEFAYDVLKEQGQDILPYLTKAWSDMLKAFLQEAKWCRDKHVPKFEEYLNNAWVSVSGVVILTHAYFLLNHSITKEALESLDNYHSLLQTPSTIFRLCNDLGTSKAELERGEAASSIVCYMRESGASEEGAYKNIHNLLNETWKKMNKDGIKHSPFPKPFVETAMNLARISQCTYQYGDAHGAPDNTAKNRVRSLIIEPIAL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01045 589 Coils Coil 73 93 - -
Cca04g01045 589 PANTHER OS04G0344100 PROTEIN-RELATED 38 588 - -
Cca04g01045 589 Pfam Terpene synthase family, metal binding domain 267 532 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca04g01045 589 PANTHER TERPENE SYNTHASE 12-RELATED 38 588 - -
Cca04g01045 589 SUPERFAMILY Terpenoid synthases 263 587 IPR008949 -
Cca04g01045 589 Pfam Terpene synthase, N-terminal domain 59 236 IPR001906 GO:0010333|GO:0016829
Cca04g01045 589 SFLD Terpene Cyclase Like 1 C Terminal Domain - Enzymatic 263 588 - -
Cca04g01045 589 Gene3D - 96 262 IPR036965 GO:0010333|GO:0016829
Cca04g01045 589 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 55 261 IPR008930 -
Cca04g01045 589 Gene3D Farnesyl Diphosphate Synthase 56 577 IPR008949 -
Cca04g01045 589 CDD Terpene_cyclase_plant_C1 49 586 IPR044814 GO:0010333|GO:0016102
Cca04g01045 589 SFLD Isoprenoid Synthase Type I 263 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01045 Cca-Chr4 11444203 11448959 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01045 K12742 K19968 gmx:100782452 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01045 04 11444203 11448959 Cca04g01045 04 11444203 11448959 ECH
Cca10g00757 10 8633105 8638045 Cca04g01045 04 11444203 11448959 PCT