Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00713 ATGGCTTCAGCGGAGAAACAACCACTCTTGGAGAATTCAGACTCAAAAGACGCCTCCGATGGGAAACTCGAGAGAATCCTAACCGATAACTCATTACCCTTGCTGAACCGCGTGGGAGCCGCCACGTGGATCGAGTTGAAGCTCCTCTTCTTCCTCGCCGCCCCCGCCGTCTTGGTCTACCTCATCAACTACGTCATGTCCATGTCCACGCAAATCTTCTCCGGCCACCTCGGCAACCTCGAACTGGCCGCCGCCTCGCTCGGCAACACCGGCATCCAAATCTTCGCCTACGGCCTCATGTTAGGCATGGGGAGTGCGGTTGAGACGCTATGCGGCCAAGCATTCGGTGCTCAGAAGTTCGACATGCTAGGCGTCTACATGCAACGCTCAACGATCCTCCTCTCCCTAGCGGGAATTCTTTTGACTATCATATACATTTTCAGCGAACCGATTTTGATATTTCTCGGGGAATCGCCGAGAATCGCTTCCGCCGCGGCGCTCTTCGTCTACGGTCTCATCCCTCAGATCTTCGCCTACGCCGTGAACTTCCCCATCCAGAAGTTCCTCCAGGCGCAGAGCATCGTGGCGCCCAGCGCCTACATCTCAGCCGCCACGCTGTTGCTCCACCTGGCGCTGAGTTGGGTGGCGGTGTACGAGATTGGGCTGGGCCTGCTGGGCGCCTCGCTCGTTCTCAGCCTCTCCTGGTGGATCATTGTCATAGCCCAGTTTGTTTATATTGTGAAGAGCGAGCGCTGCAGGCGCACGTGGCAGGGCTTCACGTGGCAAGCGTTCTCCGGGTTGCCCGGGTTTTTCAAGCTGTCCGCAGCCTCCGCGGTTATGCTGTGTTTGGAGACGTGGTATTTTCAGATTCTCGTTTTGCTCGCCGGGCTTCTCCCTCAACCTGAGTTGGCGCTCGATTCTCTTTCTATTTGTACCACAATTTCTGGATGGGTGTTCATGATCTCTGTTGGGTTCAACGCAGCTGCAAGCGTGAGAGTGAGCAACGAACTAGGAGCAAGAAATCCAAAATCAGCCTCGTTTTCGGTGGTGGTGGTGACATTGATTTCTTTAATAATATCAGTTATTGCAGCACTGGTGGTTCTTGCATTAAGGGATGTCATTAGCTATGCCTTCACAGGGGGTGAAGAAGTTGCTGCTGCAGTTTCAGATCTTTGCCCTCTGCTTGCTCTTGCTCTTGTCCTCAATGGCATTCAGCCCGTCTTATCTGGGGTGGCTGTTGGATGTGGATGGCAAGCTTTCGTAGCTTATGTAAACGTGGGTTGTTATTATGGAGTTGGCATACCATTGGGTGCGGTTCTCGGCTTTTATTTCAAATTTGGTGCCAAGGGAATATGGGTGGGAATGCTAGGTGGCACCGTTATGCAAACAATTATTCTAATTTGGGTCACATTTAGAACGGATTGGACTAAGGAGGTGGAGGAAGCAGCCAAGAGGTTGAAAGCATGGGAGGACAAGAAGGAGGAGCCACTTCTAATAAACTGA 1503 0.5269 MASAEKQPLLENSDSKDASDGKLERILTDNSLPLLNRVGAATWIELKLLFFLAAPAVLVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAQKFDMLGVYMQRSTILLSLAGILLTIIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISAATLLLHLALSWVAVYEIGLGLLGASLVLSLSWWIIVIAQFVYIVKSERCRRTWQGFTWQAFSGLPGFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISLIISVIAALVVLALRDVISYAFTGGEEVAAAVSDLCPLLALALVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYGVGIPLGAVLGFYFKFGAKGIWVGMLGGTVMQTIILIWVTFRTDWTKEVEEAAKRLKAWEDKKEEPLLIN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00713 500 PANTHER MULTIDRUG RESISTANCE PROTEIN 13 486 - -
Cca10g00713 500 PANTHER PROTEIN DETOXIFICATION 13 486 - -
Cca10g00713 500 CDD MATE_eukaryotic 45 481 IPR045069 GO:0042910|GO:1990961
Cca10g00713 500 Pfam MatE 55 215 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g00713 500 Pfam MatE 277 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g00713 500 TIGRFAM matE: MATE efflux family protein 55 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g00713 500 Coils Coil 472 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00713 Cca-Chr10 8067614 8075823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00713 K03327 - gmx:100795338 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00713 10 8067614 8075823 Cca10g00713 10 8067614 8075823 ECH
Cca10g00713 10 8067614 8075823 Cca04g01021 04 11114377 11120386 PCT