Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01021 ATGGGTTCTACATCAGTGGACAAGGAAGTTGATGAACCTTTGCTGCTCTCAAGCCAACCCCCATCATCACCTTCAAGTTTCACTTCAAAGCACGGTTCAGACGGTGAACTTGAGCGAATACTCACAAACACCAACGTCCCTTTTCGGAAGCGCATAGGAGCCGCAACATGGGTGGAGTTCAAGCTCTTGTTTCACCTCGCTGCTCCTGCTGTCATCGTCTACCTTATCAACTACGTCATGTCCATGTCCACCCAAATCTTCTCCGGCCACCTCGGTAACCTCGAACTCGCTGCTGCTTCCCTCGGAAACAACGGCATCCAAGTCTTCGCTTATGGCCTCATGTTGGGGATGGGGAGTGCCGTGGAGACACTATGTGGACAAGCATACGGTGCAAAGAAGTACGAGATGTTAGGAGTATACTTGCAAAGATCTACGGTGCTTCTCACTCTATCAGGTCTTCTTCTAACCCTAATCTACATCTTCTCAAACCCAATTCTAATCTTCCTCGGAGAGTCCACAAGAATCGCGTCCGCAGCCGCGCTTTTCGTGTACGGTCTAATCCCACAAATCTTCGCCTACGCCGCGAACTTCCCCATCCAGAAGTTCCTTCAGGCGCAGAGCATAGTGGCGCCGAGCGCCTACATTTCCTCTGCGACTTTATTGGTCCACCTGGCGTTGAGTTGGGTGGCGGTGTACGAGGTGGGACTAGGGTTGCTTGGCGCGTCGCTTGTGCTGAGCGTTTCGTGGTGGATCATCGTGGTTGCGCAGTTTGTGTACATTGTGAAGAGTGAAAGGTGTAGGAAGACGTGGCGTGGGTTTAGTTTAGAAGCGTTTTCGGGGTTGCCGGAGTTCTTCAAGCTGTCGGCGGCGTCGGCGGTGATGCTGTGCCTGGAGACGTGGTACTTCCAGATTTTGGTTTTGCTTGCTGGGTTGCTTCCTCACCCTGAGTTGGCTCTTGAttctctttctatttgTACCACAGTGTCTGGATGGGTTTTCATGATCTCAGTTGGATTTAACGCAGCTGCAAGTGTGAGAGTGAGCAACGAACTCGGTGCAAGAAATCCAAAATCAGCTTCATTTTCAGTGGTGGTGGTGACATTGATTTCTTTGATAATATCAGTCATTGTGGCAGTGGTAGTGCTGGCAATTCGAGACATCATTAGCTATGCCTTCACAGATGGTGAAGAGGTCGCTGCTGCTGTCTCAGATCTTTGTCCCCTCCTTGCTCTTTCTATTGTCCTCAATGGCATTCAGCCTGTCTTATCTGGGGTGGCGGTTGGATGTGGATGGCAAACTTTTGTTGCGTATGTGAACGTTGGTTGCTATTATGGAATTGGAATACCATTGGGTTCAGTTCTTGGTTTCTATTTCAAACTTGGTGCTAAGGGAATATGGGTGGGAATGTTAGGTGGCACGGTTTTGCAAACAATTATTTTAGTGTGGGTTACATTTCGAACGGATTGGAATAAAGAGGTTGAAGCAGCAGCAAAGAGGTTGAACAAGTGGGAGGATAATAAAGAGCCACTTCTAAAGAACTGA 1542 0.4864 MGSTSVDKEVDEPLLLSSQPPSSPSSFTSKHGSDGELERILTNTNVPFRKRIGAATWVEFKLLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNNGIQVFAYGLMLGMGSAVETLCGQAYGAKKYEMLGVYLQRSTVLLTLSGLLLTLIYIFSNPILIFLGESTRIASAAALFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYISSATLLVHLALSWVAVYEVGLGLLGASLVLSVSWWIIVVAQFVYIVKSERCRKTWRGFSLEAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISLIISVIVAVVVLAIRDIISYAFTDGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSVLGFYFKLGAKGIWVGMLGGTVLQTIILVWVTFRTDWNKEVEAAAKRLNKWEDNKEPLLKN 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01021 513 MobiDBLite consensus disorder prediction 16 31 - -
Cca04g01021 513 TIGRFAM matE: MATE efflux family protein 69 466 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g01021 513 Coils Coil 486 506 - -
Cca04g01021 513 CDD MATE_eukaryotic 59 494 IPR045069 GO:0042910|GO:1990961
Cca04g01021 513 Pfam MatE 69 229 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g01021 513 Pfam MatE 291 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g01021 513 PANTHER MULTIDRUG RESISTANCE PROTEIN 19 500 - -
Cca04g01021 513 PANTHER PROTEIN DETOXIFICATION 19 500 - -
Cca04g01021 513 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01021 Cca-Chr4 11114377 11120386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01021 K03327 - gmx:100801718 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01021 04 11114377 11120386 Cca04g01021 04 11114377 11120386 ECH
Cca10g00713 10 8067614 8075823 Cca04g01021 04 11114377 11120386 PCT