Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00711 ATGGCCTCTTCTGTATCTTCACTCCTCCGAGCTTCCAGGTCTAAGCTCTCCTCGTCTTCCTCCGCTTCTCTTTCTAGAACCTTTGCTCGCGCCTCTCCTCGCCGATCCCTCGGCTCCTCCACCGCCGCTCGCTCATTCGCCTCCGCCGTCCCCCGATGGAGCCACGGCGTCGATTGGAGGTCTCCGCTCGGCCTCCGCAATCAGATCAGAGCCGTCGCTCCTCTCATCGAACGCTTCCACCGCAGGATCGCCACCAGCGCTACTGAGAATCCTTTCAAGGGAAACTTGACGAGTCTCCCTAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGCCTTCCGTCGCTCAACGATCCAAGAATTGATAGGTTGCCATACTCTATCAGGATTCTACTTGAATCTGCCATTCGTAATTGTGACAGTTTCCAAGTTACTAAGGAGGATGTTGAGAAGATTATTGACTGGGAAAACTCTTCTGTCAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTTCTACTGCAGGATTTTACTGGAGTGCCGGCTGTCGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATCAATCCCCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTAGCTAGGTCAGAGAATGCAGTGCAGGCCAATATGGAACTTGAGTTCCAGAGGAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCTTTCCATAACATGCTTGTTGTCCCTCCTGGTTCTGGTATAGTACATCAAGTCAATCTTGAATATCTTGGACGTGTTGTTTTCAACAATGAAGGCTTGCTCTATCCAGACAGTGTGGTTGGGACTGATTCACATACAACAATGATAGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCAGAGGCAGCAATGCTTGGCCAACCTATGAGCATGGTGTTACCTGGTGTTGTTGGGTTTAAGTTATCTGGAAAATTGCGCAATGGTGTGACAGCAACTGACTTGGTTCTAACTGCAACACAAATGCTTAGGAAACATGCTAATTACCAATTTTCATGTTGTTCTATAGGTGATGGTATGGGTGAGTTATCATTAGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGTGCAACCATGGGCTTCTTCCCTGTAGATCATGTTACGTTACAGTACCTCAAATTAACTGGAAGAAGTGATGAGACTGTGGCAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTATTGATTATAATGAGCCTCAACCAGACAGAGTTTATTCATCATATCTTGAATTGAATCTTGACGAAGTTGAACCATGCATCTCAGGACCCAAGAGACCTCATGATCGGGTGCCTTTGAAGGAAATGAAGGCTGATTGGCATGCTTGTCTCGACAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGATGTACAAGGCAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCAGAGCTCAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAATCCAAGTGTTATGCTTGGAGCTGGTCTTGTAGCAAAGAAGGCTCACGAGCTAGGTTTGAAGGTTAAGCCATGGGTAAAAACAAGTCTTGCTCCTGGCTCTGGAGTTGTTACAAAATATCTACTTAAGAGTGGCCTGCAAAAGTATCTAAATGAACAAGGTTTCAATATTGTTGGATTTGGCTGTACCACATGCATTGGTAATTCAGGGGATCTGGACCAATCAGTTGCTTCTGCTATCTCTGAAAATGACATTGTCGCCGCTGCTGTGTTATCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCTTTGACTAGAGCTAACTACCTTGCCTCACCACCTCTAGTTGTTGCTTATGCTCTCGCTGGCACAGTTGACATTGACTTTGAGAAGGAGCCAATAGGGACAGGGAGGGATGGGAAGAATATTTACTTGAGGGATGTTTGGCCATCCACTCAAGAAATTGCAGATGCTGTCCAATCCAGTGTATTGCCTGACATGTTCCGAAGTACATATGAAGCCATTACCAAAGGTAATACTATGTGGAACCAACTACAAAAGCTGTACTCATGGGACCCCAAGTCAACATATATTCATGAACCTCCATACTTCAAGGGCATGACCATGGATCCTCCTGGAGCTCATGGTGTGAAAGATGCCTATTGTCTGCTGAATTTTGGTGACAGTATAACTACTGATCACATTTCTCCCGCTGGAAACATTAACAAGGACAGTCCTGCTGCAAAATACCTTCTGGAGCGAGGTGTTGAACAAAAGGACTTCAACTCTTATGGAAGTCGTCGTGGCAATGATGAAGTGATGGCAAGGGGAACTTTTGCTAACATTCGTCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGACCCAAGACTGTTCACATTCCGACTGGGGAGAAGCTTTATGTGTTTGATGCAGCACAGAGATACAAGGCATCAGGGCAGGACACCATTGTTTTGGCTGGAGCTGAATATGGTAGTGGAAGTTCCAGAGATTGGGCCGCCAAGGGTCCCATGCTATTGGGTGTCAAAGCAGTGATAGCCAAAAGTTTTGAGAGAATTCATCGTAGTAATTTGGTAGGAATGGGTATTATTCCTCTCTGCTTTAAATCTGGTGAGGACGCTGACACATTGGGATTGACTGGTCACGAACGTTACACTATTGACCTCCCAAGTAACATCAGCGAAATAAGGCCTGGCCAAGATGTCACTGTGACAACCAATACTGGAAAATCTTTCACCTGCACAGTTCGCTTTGACACTGAGGTGGAGCTTGCTTACTTTAACCATGGAGGCATACTTCCATATGTCATCAGGAACCTCACCAAGCAGTGA 2940 0.4575 MASSVSSLLRASRSKLSSSSSASLSRTFARASPRRSLGSSTAARSFASAVPRWSHGVDWRSPLGLRNQIRAVAPLIERFHRRIATSATENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDSFQVTKEDVEKIIDWENSSVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFHNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTATQMLRKHANYQFSCCSIGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFIDYNEPQPDRVYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKDVQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLKSGLQKYLNEQGFNIVGFGCTTCIGNSGDLDQSVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGRDGKNIYLRDVWPSTQEIADAVQSSVLPDMFRSTYEAITKGNTMWNQLQKLYSWDPKSTYIHEPPYFKGMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLLERGVEQKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLYVFDAAQRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIRPGQDVTVTTNTGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLTKQ 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00711 979 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 55 979 IPR006249 -
Cca10g00711 979 Gene3D Aconitase, domain 3 89 457 IPR015931 -
Cca10g00711 979 PANTHER ACONITATE HYDRATASE 55 979 - -
Cca10g00711 979 ProSitePatterns Aconitase family signature 2. 584 597 IPR018136 -
Cca10g00711 979 Pfam Aconitase C-terminal domain 778 905 IPR000573 -
Cca10g00711 979 PRINTS Aconitase family signature 285 298 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 299 314 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 375 388 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 232 245 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 584 597 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 522 533 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 256 264 IPR001030 -
Cca10g00711 979 PRINTS Aconitase family signature 457 471 IPR001030 -
Cca10g00711 979 SUPERFAMILY LeuD/IlvD-like 718 976 - -
Cca10g00711 979 TIGRFAM aconitase_1: aconitate hydratase 1 108 976 IPR006249 -
Cca10g00711 979 Gene3D Aconitase, domain 4 742 978 IPR015928 -
Cca10g00711 979 CDD AcnA_IRP 171 655 - -
Cca10g00711 979 CDD AcnA_IRP_Swivel 755 925 IPR044137 -
Cca10g00711 979 Gene3D Aconitase, domain 3 458 681 IPR015931 -
Cca10g00711 979 SUPERFAMILY Aconitase iron-sulfur domain 104 716 IPR036008 -
Cca10g00711 979 Pfam Aconitase family (aconitate hydratase) 150 653 IPR001030 -
Cca10g00711 979 Gene3D - 682 739 - -
Cca10g00711 979 ProSitePatterns Aconitase family signature 1. 518 534 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00711 Cca-Chr10 8048427 8057608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00711 K01681 - gmx:100810088 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00711 10 8048427 8057608 Cca10g00711 10 8048427 8057608 ECH
Cca10g00711 10 8048427 8057608 Cca04g01017 04 11071179 11080408 PCT